Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SNORD65B-201ENST00000459126 73 ntBASIC1.57□□□□□ -2.16
CDX1P47902 AC074133.1-201ENST00000515696 183 ntBASIC1.57□□□□□ -2.16
CDX1P47902 RNU6-277P-201ENST00000516272 106 ntBASIC1.57□□□□□ -2.16
CDX1P47902 RNU6-875P-201ENST00000516488 106 ntBASIC1.57□□□□□ -2.16
CDX1P47902 RNU7-4P-201ENST00000516961 62 ntBASIC1.57□□□□□ -2.16
CDX1P47902 AC144568.1-201ENST00000520139 137 ntBASIC1.57□□□□□ -2.16
CDX1P47902 AC018448.1-201ENST00000552843 316 ntBASIC1.57□□□□□ -2.16
CDX1P47902 DEFB122-202ENST00000569013 197 ntBASIC1.57□□□□□ -2.16
CDX1P47902 AL132765.2-201ENST00000610812 351 ntBASIC1.57□□□□□ -2.16
CDX1P47902 AL357075.2-201ENST00000614906 189 ntBASIC1.57□□□□□ -2.16
CDX1P47902 AC073544.1-201ENST00000600110 1595 ntBASIC1.56□□□□□ -2.16
CDX1P47902 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.56□□□□□ -2.16
CDX1P47902 AC100821.1-201ENST00000523153 2479 ntBASIC1.56□□□□□ -2.16
CDX1P47902 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.56□□□□□ -2.16
CDX1P47902 Y_RNA.356-201ENST00000365475 113 ntBASIC1.56□□□□□ -2.16
CDX1P47902 RNU6-1264P-201ENST00000383891 107 ntBASIC1.56□□□□□ -2.16
CDX1P47902 RNA5SP475-201ENST00000410568 110 ntBASIC1.56□□□□□ -2.16
CDX1P47902 ELOCP21-201ENST00000412558 336 ntBASIC1.56□□□□□ -2.16
CDX1P47902 AL445685.2-201ENST00000422551 342 ntBASIC1.56□□□□□ -2.16
CDX1P47902 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.56□□□□□ -2.16
CDX1P47902 RNU7-169P-201ENST00000459456 61 ntBASIC1.56□□□□□ -2.16
CDX1P47902 AC105758.1-201ENST00000506038 399 ntBASIC1.56□□□□□ -2.16
CDX1P47902 RNA5SP182-201ENST00000516064 82 ntBASIC1.56□□□□□ -2.16
CDX1P47902 AC080078.3-201ENST00000605407 463 ntBASIC1.56□□□□□ -2.16
CDX1P47902 AC084781.2-201ENST00000615568 161 ntBASIC1.56□□□□□ -2.16
CDX1P47902 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
CDX1P47902 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
CDX1P47902 Y_RNA.314-201ENST00000365114 102 ntBASIC1.55□□□□□ -2.16
CDX1P47902 RNU6-318P-201ENST00000384283 103 ntBASIC1.55□□□□□ -2.16
CDX1P47902 RNU2-2P-201ENST00000410396 191 ntBASIC1.55□□□□□ -2.16
CDX1P47902 SNORD12B-201ENST00000410433 91 ntBASIC1.55□□□□□ -2.16
CDX1P47902 MTCO2P27-201ENST00000420740 428 ntBASIC1.55□□□□□ -2.16
CDX1P47902 MTND4P28-201ENST00000426217 387 ntBASIC1.55□□□□□ -2.16
CDX1P47902 JTBP1-201ENST00000441314 247 ntBASIC1.55□□□□□ -2.16
CDX1P47902 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.55□□□□□ -2.16
CDX1P47902 snoU13.27-201ENST00000459278 104 ntBASIC1.55□□□□□ -2.16
CDX1P47902 RNU6-625P-201ENST00000459412 107 ntBASIC1.55□□□□□ -2.16
CDX1P47902 AC005908.1-201ENST00000468701 347 ntBASIC1.55□□□□□ -2.16
CDX1P47902 RPS27P22-201ENST00000478056 241 ntBASIC1.55□□□□□ -2.16
CDX1P47902 RPL26P26-201ENST00000480251 434 ntBASIC1.55□□□□□ -2.16
CDX1P47902 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.55□□□□□ -2.16
CDX1P47902 AC010598.1-201ENST00000510378 103 ntBASIC1.55□□□□□ -2.16
CDX1P47902 AL355375.2-201ENST00000574825 175 ntBASIC1.55□□□□□ -2.16
CDX1P47902 AC024614.2-201ENST00000577584 372 ntBASIC1.55□□□□□ -2.16
CDX1P47902 AC016925.2-201ENST00000605108 242 ntBASIC1.55□□□□□ -2.16
CDX1P47902 Y_RNA.783-201ENST00000613546 102 ntBASIC1.55□□□□□ -2.16
CDX1P47902 U6.73-201ENST00000619194 103 ntBASIC1.55□□□□□ -2.16
CDX1P47902 MIR7843-201ENST00000622274 79 ntBASIC1.55□□□□□ -2.16
CDX1P47902 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
CDX1P47902 RNU6-1301P-201ENST00000362724 104 ntBASIC1.54□□□□□ -2.16
CDX1P47902 RNA5SP109-201ENST00000391010 116 ntBASIC1.54□□□□□ -2.16
CDX1P47902 RNY4P36-201ENST00000391116 96 ntBASIC1.54□□□□□ -2.16
CDX1P47902 MIR934-201ENST00000401241 83 ntBASIC1.54□□□□□ -2.16
CDX1P47902 Y_RNA.592-201ENST00000410274 109 ntBASIC1.54□□□□□ -2.16
CDX1P47902 AL139156.1-201ENST00000412785 841 ntBASIC1.54□□□□□ -2.16
CDX1P47902 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.54□□□□□ -2.16
CDX1P47902 AC005002.2-201ENST00000438228 269 ntBASIC1.54□□□□□ -2.16
CDX1P47902 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.54□□□□□ -2.16
CDX1P47902 AC010469.2-201ENST00000496412 480 ntBASIC1.54□□□□□ -2.16
CDX1P47902 SNORA40.9-201ENST00000515895 93 ntBASIC1.54□□□□□ -2.16
CDX1P47902 RNU6-507P-201ENST00000516045 100 ntBASIC1.54□□□□□ -2.16
CDX1P47902 Y_RNA.702-201ENST00000516843 96 ntBASIC1.54□□□□□ -2.16
CDX1P47902 Y_RNA.718-201ENST00000517110 102 ntBASIC1.54□□□□□ -2.16
CDX1P47902 AC023157.2-201ENST00000540596 141 ntBASIC1.54□□□□□ -2.16
CDX1P47902 HSBP1P1-201ENST00000555205 166 ntBASIC1.54□□□□□ -2.16
CDX1P47902 MIR4709-201ENST00000577272 72 ntBASIC1.54□□□□□ -2.16
CDX1P47902 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.54□□□□□ -2.16
CDX1P47902 AC087588.2-201ENST00000617667 426 ntBASIC1.54□□□□□ -2.16
CDX1P47902 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.53□□□□□ -2.16
CDX1P47902 RNU6-490P-201ENST00000362985 107 ntBASIC1.53□□□□□ -2.16
CDX1P47902 SNORA4.2-201ENST00000365313 147 ntBASIC1.53□□□□□ -2.16
CDX1P47902 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.53□□□□□ -2.16
CDX1P47902 Y_RNA.529-201ENST00000384586 119 ntBASIC1.53□□□□□ -2.16
CDX1P47902 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
CDX1P47902 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.53□□□□□ -2.16
CDX1P47902 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.53□□□□□ -2.16
CDX1P47902 HSPE1P24-201ENST00000450782 238 ntBASIC1.53□□□□□ -2.16
CDX1P47902 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.53□□□□□ -2.16
CDX1P47902 ELOCP24-201ENST00000456370 334 ntBASIC1.53□□□□□ -2.16
CDX1P47902 RNU7-34P-201ENST00000459394 64 ntBASIC1.53□□□□□ -2.16
CDX1P47902 AL117351.2-201ENST00000513571 157 ntBASIC1.53□□□□□ -2.16
CDX1P47902 RNU7-99P-201ENST00000516271 62 ntBASIC1.53□□□□□ -2.16
CDX1P47902 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.53□□□□□ -2.16
CDX1P47902 MIR3684-201ENST00000579779 74 ntBASIC1.53□□□□□ -2.16
CDX1P47902 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.53□□□□□ -2.16
CDX1P47902 MIR3124-201ENST00000582636 67 ntBASIC1.53□□□□□ -2.16
CDX1P47902 MIR4438-201ENST00000585271 93 ntBASIC1.53□□□□□ -2.16
CDX1P47902 AC006435.5-201ENST00000624486 112 ntBASIC1.53□□□□□ -2.16
CDX1P47902 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.53□□□□□ -2.17
CDX1P47902 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
CDX1P47902 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
CDX1P47902 MIR126-201ENST00000362291 85 ntBASIC1.52□□□□□ -2.17
CDX1P47902 Y_RNA.70-201ENST00000362886 110 ntBASIC1.52□□□□□ -2.17
CDX1P47902 SNORD116-29-201ENST00000384516 83 ntBASIC1.52□□□□□ -2.17
CDX1P47902 RNU6-950P-201ENST00000384651 107 ntBASIC1.52□□□□□ -2.17
CDX1P47902 RPL21P1-201ENST00000399532 476 ntBASIC1.52□□□□□ -2.17
CDX1P47902 MIR1289-2-201ENST00000408360 111 ntBASIC1.52□□□□□ -2.17
CDX1P47902 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.52□□□□□ -2.17
CDX1P47902 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.52□□□□□ -2.17
CDX1P47902 Y_RNA.632-201ENST00000459189 102 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 172.5 ms