Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.54□□□□□ -2.16
HOXC4P09017 Y_RNA.706-201ENST00000516933 99 ntBASIC1.54□□□□□ -2.16
HOXC4P09017 AC022616.8-201ENST00000533569 253 ntBASIC1.54□□□□□ -2.16
HOXC4P09017 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.54□□□□□ -2.16
HOXC4P09017 AC113195.1-201ENST00000579952 141 ntBASIC1.54□□□□□ -2.16
HOXC4P09017 AL034555.1-201ENST00000604816 211 ntBASIC1.54□□□□□ -2.16
HOXC4P09017 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
HOXC4P09017 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.54□□□□□ -2.16
HOXC4P09017 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
HOXC4P09017 MIR378A-201ENST00000362177 66 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 Y_RNA.26-201ENST00000362539 101 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 SNORD115-32-201ENST00000364079 82 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 Y_RNA.455-201ENST00000384230 98 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 Y_RNA.512-201ENST00000384518 102 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 RNU6-997P-201ENST00000384725 107 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 RNU6-1105P-201ENST00000384774 107 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 MIR568-201ENST00000385036 95 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
HOXC4P09017 MTCYBP2-201ENST00000407745 171 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 RNU4-62P-201ENST00000410125 130 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 RNA5SP201-201ENST00000410316 124 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 SRIP3-201ENST00000413200 219 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.53□□□□□ -2.16
HOXC4P09017 AP1B1P2-201ENST00000416196 106 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 AL590556.1-201ENST00000423231 483 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 AL358176.2-201ENST00000425769 204 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.53□□□□□ -2.16
HOXC4P09017 AC132942.1-201ENST00000486753 483 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.53□□□□□ -2.16
HOXC4P09017 RNU7-4P-201ENST00000516961 62 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 RNU6-58P-201ENST00000517143 103 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 AC144568.1-201ENST00000520139 137 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 AC040926.1-201ENST00000530195 238 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 AC018630.3-201ENST00000542637 96 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 AC016256.1-201ENST00000547971 354 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 AC021231.3-201ENST00000558497 370 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.53□□□□□ -2.16
HOXC4P09017 VN1R91P-201ENST00000594377 169 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 AC016727.2-201ENST00000603988 621 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 AC124312.5-201ENST00000604451 268 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 AL162730.1-201ENST00000605734 292 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 BX248123.2-201ENST00000606318 124 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 RMST_6.1-201ENST00000611980 203 ntBASIC1.53□□□□□ -2.16
HOXC4P09017 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.17
HOXC4P09017 RNA5SP361-201ENST00000362686 118 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 RNU6-1301P-201ENST00000362724 104 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 SNORD115-3-201ENST00000363100 82 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 RNU6-1309P-201ENST00000363305 108 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 Y_RNA.133-201ENST00000363428 110 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 Y_RNA.319-201ENST00000365138 92 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 SNORD14.1-201ENST00000365609 90 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 RNU6-574P-201ENST00000384265 107 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 RNU6-318P-201ENST00000384283 103 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 SNORD14D-201ENST00000384390 87 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 MIR10B-201ENST00000385011 110 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 MIR153-2-201ENST00000385225 87 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 SNORA67.6-201ENST00000391093 99 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 MIR208B-201ENST00000401172 77 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 MIR548F4-201ENST00000408515 105 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.52□□□□□ -2.17
HOXC4P09017 AC114482.1-201ENST00000418010 247 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 BTF3P4-201ENST00000418852 495 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
HOXC4P09017 EIF1P2-201ENST00000428233 350 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 PRELID3BP1-201ENST00000457142 540 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 MTND5P22-201ENST00000458380 195 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 AC010655.3-201ENST00000478818 450 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 AC145146.1-201ENST00000496370 254 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 SNORA40.14-201ENST00000516543 86 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 AC022868.1-201ENST00000517767 391 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 AC115990.1-201ENST00000526957 301 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.52□□□□□ -2.17
HOXC4P09017 CYP4A27P-201ENST00000567218 190 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 MIR4498-201ENST00000577599 66 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 AC125232.2-201ENST00000592457 143 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.52□□□□□ -2.17
HOXC4P09017 7SK.7-201ENST00000603504 247 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 AL512598.1-201ENST00000610158 273 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.52□□□□□ -2.17
HOXC4P09017 AL021879.1-201ENST00000611756 288 ntBASIC1.52□□□□□ -2.17
HOXC4P09017 RNU6-806P-201ENST00000365147 105 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 Y_RNA.424-201ENST00000384063 103 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
HOXC4P09017 RNU6-159P-201ENST00000391080 106 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 RNU6-1093P-201ENST00000391194 107 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 MIR1283-2-201ENST00000408621 87 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 RNU6-130P-201ENST00000411112 103 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 AC004866.1-201ENST00000411748 78 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.51□□□□□ -2.17
HOXC4P09017 RNU6-475P-201ENST00000516073 104 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 RNU6-970P-201ENST00000516312 107 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 Y_RNA.715-201ENST00000517082 110 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 DEFB131C-201ENST00000528817 165 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.51□□□□□ -2.17
HOXC4P09017 DNAJC19P9-201ENST00000555084 351 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.51□□□□□ -2.17
HOXC4P09017 AC090617.3-201ENST00000573670 475 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 MIR5695-201ENST00000579717 85 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 MIR3136-201ENST00000583498 78 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 175.3 ms