Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC002543.1-201ENST00000299783 1954 ntBASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC4.29□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 RNU6-1164P-201ENST00000364428 107 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 RNU6-487P-201ENST00000365430 104 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 Y_RNA.361-201ENST00000365515 120 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 SNORD18B-201ENST00000365659 72 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 RNU6-1181P-201ENST00000384191 106 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 EI24P2-201ENST00000397776 1076 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 RNY4P29-201ENST00000410801 97 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 RNU6-383P-201ENST00000410864 94 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 Y_RNA.617-201ENST00000410920 90 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 MLLT10P1-201ENST00000418346 262 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 Y_RNA.649-201ENST00000459077 103 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 HMGB1P22-201ENST00000505315 124 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC091826.1-201ENST00000514065 313 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 RNU6-412P-201ENST00000516434 106 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 MIR3923-201ENST00000579521 83 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 MIR2682-201ENST00000580305 110 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 AC091178.2-201ENST00000584401 117 ntBASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
SENP3-EIF4A1A0A087X0R7 SNORD56.3-201ENST00000363507 71 ntBASIC4.27□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RNU6-136P-201ENST00000384663 107 ntBASIC4.27□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 MIR548A1-201ENST00000385041 97 ntBASIC4.27□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 MIR764-201ENST00000390811 85 ntBASIC4.27□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 SNORD67-201ENST00000390833 111 ntBASIC4.27□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 NDUFS5P4-201ENST00000412983 318 ntBASIC4.27□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 CST9LP2-201ENST00000437612 320 ntBASIC4.27□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 HSPE1P21-201ENST00000438283 308 ntBASIC4.27□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AC008413.1-201ENST00000511864 177 ntBASIC4.27□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RNU6-1282P-201ENST00000516735 96 ntBASIC4.27□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AC025281.1-201ENST00000567026 265 ntBASIC4.27□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.27□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RNU6-622P-201ENST00000384272 103 ntBASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 Y_RNA.558-201ENST00000384685 113 ntBASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 CBX3P9-201ENST00000402326 552 ntBASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RPL23AP48-201ENST00000406913 488 ntBASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RPS26P45-201ENST00000471748 340 ntBASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AC021205.2-201ENST00000480069 347 ntBASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 MIR4319-201ENST00000577285 85 ntBASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 UBL5P2-201ENST00000583788 219 ntBASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AC131055.1-201ENST00000584626 316 ntBASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 MIR548AY-201ENST00000617669 107 ntBASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AL136964.1-201ENST00000622038 2990 ntBASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 U6.115-201ENST00000636045 103 ntBASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 SNORD114-19-201ENST00000363072 75 ntBASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 SNORD87-201ENST00000364849 89 ntBASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RNU6-1080P-201ENST00000383982 107 ntBASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AL603914.1-201ENST00000401964 204 ntBASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 SNRPGP8-201ENST00000454064 226 ntBASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AIG1P1-201ENST00000503376 148 ntBASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RN7SKP19-201ENST00000516016 252 ntBASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RNU6-197P-201ENST00000516680 100 ntBASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AP003327.1-201ENST00000529684 127 ntBASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RPL30P11-203ENST00000598995 310 ntBASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 SNRPGP15-201ENST00000600149 222 ntBASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RNU6-905P-201ENST00000384434 107 ntBASIC4.24□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AL138878.1-201ENST00000405131 347 ntBASIC4.24□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 SNORA36B-201ENST00000410438 131 ntBASIC4.24□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AL591806.2-201ENST00000433122 173 ntBASIC4.24□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 NDUFS5P3-201ENST00000450668 321 ntBASIC4.24□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RPL23AP67-201ENST00000465341 474 ntBASIC4.24□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 RPL30P5-201ENST00000494923 336 ntBASIC4.24□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 SNORA64.4-201ENST00000516632 81 ntBASIC4.24□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 HIGD1AP1-201ENST00000550979 275 ntBASIC4.24□□□□□ -1.73
SENP3-EIF4A1A0A087X0R7 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 184.9 ms