Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC61Q9Y6R9 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 MAPK10-349ENST00000641767 3661 ntBASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 SPATA31D2P-201ENST00000429999 4388 ntBASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 RPS29P4-201ENST00000414733 161 ntBASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 RPL32P35-201ENST00000415214 394 ntBASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 AC110768.1-201ENST00000509222 400 ntBASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 RNU6-1006P-201ENST00000516998 103 ntBASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 CYP4A43P-201ENST00000568156 121 ntBASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 YPEL5P2-201ENST00000605553 359 ntBASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 AL359075.3-201ENST00000613288 217 ntBASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 MIR203B-201ENST00000636080 86 ntBASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CCDC61Q9Y6R9 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC61Q9Y6R9 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC61Q9Y6R9 AC017071.1-201ENST00000564407 2204 ntBASIC5.27□□□□□ -1.57
CCDC61Q9Y6R9 Y_RNA.95-201ENST00000363079 95 ntBASIC5.27□□□□□ -1.57
CCDC61Q9Y6R9 RNU4-67P-201ENST00000364569 141 ntBASIC5.27□□□□□ -1.57
CCDC61Q9Y6R9 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC61Q9Y6R9 RN7SL293P-201ENST00000481765 281 ntBASIC5.27□□□□□ -1.57
CCDC61Q9Y6R9 AC022695.1-201ENST00000522089 237 ntBASIC5.27□□□□□ -1.57
CCDC61Q9Y6R9 AC087685.1-201ENST00000587507 141 ntBASIC5.27□□□□□ -1.57
CCDC61Q9Y6R9 AC087741.2-201ENST00000619415 172 ntBASIC5.27□□□□□ -1.57
CCDC61Q9Y6R9 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC61Q9Y6R9 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC61Q9Y6R9 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC61Q9Y6R9 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC61Q9Y6R9 AC000403.1-201ENST00000613696 3585 ntBASIC5.26□□□□□ -1.57
CCDC61Q9Y6R9 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC61Q9Y6R9 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC61Q9Y6R9 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC61Q9Y6R9 RNU6-1235P-201ENST00000384559 107 ntBASIC5.26□□□□□ -1.57
CCDC61Q9Y6R9 RNU6-498P-201ENST00000459468 107 ntBASIC5.26□□□□□ -1.57
CCDC61Q9Y6R9 AC112771.1-201ENST00000463581 102 ntBASIC5.26□□□□□ -1.57
CCDC61Q9Y6R9 AC023141.12-201ENST00000512399 199 ntBASIC5.26□□□□□ -1.57
CCDC61Q9Y6R9 RNU2-35P-201ENST00000516446 142 ntBASIC5.26□□□□□ -1.57
CCDC61Q9Y6R9 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC61Q9Y6R9 U3.45-201ENST00000607547 219 ntBASIC5.26□□□□□ -1.57
CCDC61Q9Y6R9 AC013412.1-201ENST00000610687 192 ntBASIC5.26□□□□□ -1.57
CCDC61Q9Y6R9 U4atac.1-201ENST00000618345 95 ntBASIC5.26□□□□□ -1.57
CCDC61Q9Y6R9 MIR7154-201ENST00000620673 73 ntBASIC5.26□□□□□ -1.57
CCDC61Q9Y6R9 MIR548BB-201ENST00000626714 66 ntBASIC5.26□□□□□ -1.57
CCDC61Q9Y6R9 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC61Q9Y6R9 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC61Q9Y6R9 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 RNU6-50P-201ENST00000362356 103 ntBASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 SNORD115-19-201ENST00000363098 82 ntBASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 SNORD115-18-201ENST00000363293 82 ntBASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 SNORD116-10-201ENST00000363791 102 ntBASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 SNORD115-17-201ENST00000364612 82 ntBASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 Y_RNA.316-201ENST00000365118 111 ntBASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 ATP5A1P2-201ENST00000412323 255 ntBASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 HLA-N-201ENST00000437516 135 ntBASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 RN7SKP18-201ENST00000516005 275 ntBASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 Y_RNA.714-201ENST00000517065 90 ntBASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 HIGD1AP1-201ENST00000550979 275 ntBASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 MIR7975-201ENST00000619350 68 ntBASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 AC091304.10-201ENST00000641554 121 ntBASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC61Q9Y6R9 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC61Q9Y6R9 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
CCDC61Q9Y6R9 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC61Q9Y6R9 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC61Q9Y6R9 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC61Q9Y6R9 RNU6-590P-201ENST00000365039 107 ntBASIC5.24□□□□□ -1.57
CCDC61Q9Y6R9 RPS26P28-201ENST00000470806 348 ntBASIC5.24□□□□□ -1.57
CCDC61Q9Y6R9 Y_RNA.659-201ENST00000515994 113 ntBASIC5.24□□□□□ -1.57
CCDC61Q9Y6R9 AC073413.2-201ENST00000604332 360 ntBASIC5.24□□□□□ -1.57
CCDC61Q9Y6R9 MIR1255B1-201ENST00000636325 63 ntBASIC5.24□□□□□ -1.57
CCDC61Q9Y6R9 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC61Q9Y6R9 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC61Q9Y6R9 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC61Q9Y6R9 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC61Q9Y6R9 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC61Q9Y6R9 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC61Q9Y6R9 Y_RNA.94-201ENST00000363068 106 ntBASIC5.23□□□□□ -1.57
CCDC61Q9Y6R9 Y_RNA.253-201ENST00000364562 112 ntBASIC5.23□□□□□ -1.57
CCDC61Q9Y6R9 MIR605-201ENST00000385078 83 ntBASIC5.23□□□□□ -1.57
CCDC61Q9Y6R9 MIR802-201ENST00000390235 94 ntBASIC5.23□□□□□ -1.57
CCDC61Q9Y6R9 MIR1294-201ENST00000408503 142 ntBASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 166.2 ms