Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 RPS29P27-201ENST00000463711 170 ntBASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 AC007215.1-201ENST00000464893 276 ntBASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 AC099513.1-201ENST00000490423 301 ntBASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 AC091435.1-201ENST00000505442 584 ntBASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 RNU6-856P-201ENST00000516959 98 ntBASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 AP003034.1-201ENST00000534621 422 ntBASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 MIR4753-201ENST00000585119 83 ntBASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 AC073648.5-201ENST00000603502 305 ntBASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 AC068205.3-201ENST00000636385 468 ntBASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 RNU6-282P-201ENST00000365357 103 ntBASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 SNORA22-201ENST00000383907 134 ntBASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 SNORA22C-201ENST00000384614 134 ntBASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 RNU6-950P-201ENST00000384651 107 ntBASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 MIR515-2-201ENST00000384883 83 ntBASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 MIR515-1-201ENST00000384884 83 ntBASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 MIR208B-201ENST00000401172 77 ntBASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 AC245047.4-201ENST00000433189 144 ntBASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 MTND5P15-201ENST00000434246 349 ntBASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 AC024995.1-201ENST00000523014 93 ntBASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 SUB1P2-201ENST00000556401 297 ntBASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 MIR4760-201ENST00000585040 80 ntBASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 AP003465.2-201ENST00000602571 373 ntBASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 AC087752.4-201ENST00000605911 462 ntBASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 AC087683.2-201ENST00000611384 326 ntBASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 HULC.1-201ENST00000612720 240 ntBASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.79□□□□□ -2.28
SHANK3Q9BYB0 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 RNU6-1303P-201ENST00000364841 107 ntBASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 SNORA29-201ENST00000384183 140 ntBASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 RNU6-975P-201ENST00000384296 105 ntBASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 SNORD73A-201ENST00000386062 65 ntBASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 RNU6-1093P-201ENST00000391194 107 ntBASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 AL022718.1-201ENST00000412004 84 ntBASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 RPS26P42-201ENST00000413485 326 ntBASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 AL135790.2-201ENST00000437701 267 ntBASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 AC073910.1-201ENST00000445047 438 ntBASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 AC074290.1-201ENST00000448883 135 ntBASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 OR2AQ1P-201ENST00000451972 200 ntBASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 TPTE2P5-203ENST00000458118 728 ntBASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 AL163973.1-201ENST00000484753 577 ntBASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 AL163195.1-201ENST00000496941 348 ntBASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 AC012414.6-201ENST00000568241 401 ntBASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 AL354950.2-201ENST00000617939 290 ntBASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 SRP54-214ENST00000630962 162 ntTSL 5 BASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 BX322639.1-202ENST00000423987 2213 ntBASIC0.78□□□□□ -2.28
SHANK3Q9BYB0 RNU6-1322P-201ENST00000364309 107 ntBASIC0.78□□□□□ -2.29
SHANK3Q9BYB0 RNU6-1317P-201ENST00000364582 104 ntBASIC0.78□□□□□ -2.29
SHANK3Q9BYB0 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.78□□□□□ -2.29
SHANK3Q9BYB0 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC0.78□□□□□ -2.29
SHANK3Q9BYB0 Z95118.1-201ENST00000421372 247 ntBASIC0.78□□□□□ -2.29
SHANK3Q9BYB0 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.78□□□□□ -2.29
SHANK3Q9BYB0 TRBVB-201ENST00000477100 408 ntBASIC0.78□□□□□ -2.29
SHANK3Q9BYB0 RNU6-189P-201ENST00000516120 101 ntBASIC0.78□□□□□ -2.29
SHANK3Q9BYB0 AP003327.1-201ENST00000529684 127 ntBASIC0.78□□□□□ -2.29
SHANK3Q9BYB0 AL157687.1-201ENST00000554853 619 ntBASIC0.78□□□□□ -2.29
SHANK3Q9BYB0 CTHRC1P1-201ENST00000605383 469 ntBASIC0.78□□□□□ -2.29
SHANK3Q9BYB0 DLEU2_1.1-201ENST00000612089 120 ntBASIC0.78□□□□□ -2.29
SHANK3Q9BYB0 DLEU2_1.2-201ENST00000614667 120 ntBASIC0.78□□□□□ -2.29
SHANK3Q9BYB0 MIR8063-201ENST00000621930 81 ntBASIC0.78□□□□□ -2.29
SHANK3Q9BYB0 MIR6866-201ENST00000638146 69 ntBASIC0.78□□□□□ -2.29
SHANK3Q9BYB0 MTND4P5-201ENST00000435821 1374 ntBASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 RNY4P3-201ENST00000365254 95 ntBASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 RNU6-1286P-201ENST00000383871 107 ntBASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 RNU6-245P-201ENST00000384020 107 ntBASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 RNU6-214P-201ENST00000384130 107 ntBASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 RNU6-784P-201ENST00000384330 106 ntBASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 USP9YP28-201ENST00000435142 589 ntBASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 PGBD4P5-201ENST00000445958 426 ntBASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 RNU7-94P-201ENST00000459576 63 ntBASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 AC025465.4-201ENST00000513422 638 ntBASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 AC026470.2-201ENST00000561492 181 ntBASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 AC145350.1-201ENST00000567426 208 ntBASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 uc_338.34-201ENST00000617467 174 ntBASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 SNORA43.4-201ENST00000629559 138 ntBASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.77□□□□□ -2.29
SHANK3Q9BYB0 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 snoU2-30.2-201ENST00000362805 70 ntBASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 Y_RNA.296-201ENST00000364930 108 ntBASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 MIR586-201ENST00000385035 97 ntBASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 AL117342.1-201ENST00000404861 406 ntBASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 RPL37P10-201ENST00000412884 288 ntBASIC0.76□□□□□ -2.29
SHANK3Q9BYB0 SNX2P2-201ENST00000424553 323 ntBASIC0.76□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 180.4 ms