Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 Y_RNA.26-201ENST00000362539 101 ntBASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 U3.8-201ENST00000363675 217 ntBASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 Y_RNA.376-201ENST00000365638 108 ntBASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-472P-201ENST00000384299 107 ntBASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 Y_RNA.512-201ENST00000384518 102 ntBASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 RNA5SP504-201ENST00000410676 117 ntBASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 AC096920.1-201ENST00000423991 241 ntBASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 AC092427.1-202ENST00000430569 476 ntBASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 RPS27AP9-201ENST00000477681 438 ntBASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 AC109329.2-201ENST00000519658 482 ntBASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 AC005176.2-201ENST00000596933 147 ntBASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 NAA50-211ENST00000630058 177 ntTSL 5 BASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.59□□□□□ -2
PTCHD3Q3KNS1 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
PTCHD3Q3KNS1 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.58□□□□□ -2
PTCHD3Q3KNS1 SNORD81.1-201ENST00000363064 77 ntBASIC2.58□□□□□ -2
PTCHD3Q3KNS1 RNU6-727P-201ENST00000363592 107 ntBASIC2.58□□□□□ -2
PTCHD3Q3KNS1 RNU6-1264P-201ENST00000383891 107 ntBASIC2.58□□□□□ -2
PTCHD3Q3KNS1 RNU6-937P-201ENST00000384325 106 ntBASIC2.58□□□□□ -2
PTCHD3Q3KNS1 MIR9-1-201ENST00000385198 89 ntBASIC2.58□□□□□ -2
PTCHD3Q3KNS1 MT-TG-201ENST00000387429 68 ntBASIC2.58□□□□□ -2
PTCHD3Q3KNS1 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.58□□□□□ -2
PTCHD3Q3KNS1 Y_RNA.581-201ENST00000391017 97 ntBASIC2.58□□□□□ -2
PTCHD3Q3KNS1 RNU2-32P-201ENST00000411193 191 ntBASIC2.58□□□□□ -2
PTCHD3Q3KNS1 RAB28P5-201ENST00000427490 651 ntBASIC2.58□□□□□ -2
PTCHD3Q3KNS1 SEPT14P8-201ENST00000508026 178 ntBASIC2.58□□□□□ -2
PTCHD3Q3KNS1 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.58□□□□□ -2
PTCHD3Q3KNS1 AL355297.2-201ENST00000604792 129 ntBASIC2.58□□□□□ -2
PTCHD3Q3KNS1 SNORD113-5-201ENST00000607261 78 ntBASIC2.58□□□□□ -2
PTCHD3Q3KNS1 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
PTCHD3Q3KNS1 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
PTCHD3Q3KNS1 Y_RNA.288-201ENST00000364854 92 ntBASIC2.57□□□□□ -2
PTCHD3Q3KNS1 SNORD31B-201ENST00000364977 69 ntBASIC2.57□□□□□ -2
PTCHD3Q3KNS1 Y_RNA.415-201ENST00000384012 112 ntBASIC2.57□□□□□ -2
PTCHD3Q3KNS1 Y_RNA.461-201ENST00000384263 103 ntBASIC2.57□□□□□ -2
PTCHD3Q3KNS1 Y_RNA.570-201ENST00000384750 101 ntBASIC2.57□□□□□ -2
PTCHD3Q3KNS1 Y_RNA.618-201ENST00000410949 107 ntBASIC2.57□□□□□ -2
PTCHD3Q3KNS1 RNU7-14P-201ENST00000459331 62 ntBASIC2.57□□□□□ -2
PTCHD3Q3KNS1 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.57□□□□□ -2
PTCHD3Q3KNS1 AC011373.1-201ENST00000607270 237 ntBASIC2.57□□□□□ -2
PTCHD3Q3KNS1 IGHVIII-44-202ENST00000636235 289 ntBASIC2.57□□□□□ -2
PTCHD3Q3KNS1 MIR3674-201ENST00000636576 68 ntBASIC2.57□□□□□ -2
PTCHD3Q3KNS1 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
PTCHD3Q3KNS1 Y_RNA.84-201ENST00000363011 104 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 snoU2_19.2-201ENST00000363024 80 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 SNORD113-8-201ENST00000363497 74 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 SNORA25.6-201ENST00000364121 118 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 Y_RNA.396-201ENST00000383949 103 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 MT-TW-201ENST00000387382 68 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 RNA5SP475-201ENST00000410568 110 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 RNU6-1203P-201ENST00000410703 110 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 RNU2-25P-201ENST00000411041 191 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 RPL21P38-201ENST00000418090 167 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 TOMM22P2-201ENST00000430735 237 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 TRBVB-201ENST00000477100 408 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 AC098869.1-201ENST00000481627 292 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.56□□□□□ -2
PTCHD3Q3KNS1 RNU6-496P-201ENST00000516145 99 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 AC090616.3-201ENST00000582184 217 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 AC022441.3-201ENST00000605737 136 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 AC062037.2-201ENST00000610137 73 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 U4atac.1-201ENST00000618345 95 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 AC009487.4-201ENST00000624969 3585 ntBASIC2.56□□□□□ -2
PTCHD3Q3KNS1 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.56□□□□□ -2
PTCHD3Q3KNS1 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.56□□□□□ -2
PTCHD3Q3KNS1 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
PTCHD3Q3KNS1 MIR335-201ENST00000362173 94 ntBASIC2.55□□□□□ -2
PTCHD3Q3KNS1 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.55□□□□□ -2
PTCHD3Q3KNS1 MIR1283-1-201ENST00000408494 87 ntBASIC2.55□□□□□ -2
PTCHD3Q3KNS1 RNU2-20P-201ENST00000410425 191 ntBASIC2.55□□□□□ -2
PTCHD3Q3KNS1 RNU2-48P-201ENST00000410694 191 ntBASIC2.55□□□□□ -2
PTCHD3Q3KNS1 RPL23AP36-201ENST00000413895 458 ntBASIC2.55□□□□□ -2
PTCHD3Q3KNS1 AC074290.1-201ENST00000448883 135 ntBASIC2.55□□□□□ -2
PTCHD3Q3KNS1 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.55□□□□□ -2
PTCHD3Q3KNS1 MIR449C-201ENST00000516047 92 ntBASIC2.55□□□□□ -2
PTCHD3Q3KNS1 RNU6-826P-201ENST00000516827 104 ntBASIC2.55□□□□□ -2
PTCHD3Q3KNS1 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.55□□□□□ -2
PTCHD3Q3KNS1 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.55□□□□□ -2
PTCHD3Q3KNS1 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.55□□□□□ -2
PTCHD3Q3KNS1 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.55□□□□□ -2
PTCHD3Q3KNS1 MIR4298-201ENST00000584380 73 ntBASIC2.55□□□□□ -2
PTCHD3Q3KNS1 MIR1248-201ENST00000629190 106 ntBASIC2.55□□□□□ -2
PTCHD3Q3KNS1 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.55□□□□□ -2
PTCHD3Q3KNS1 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.54□□□□□ -2
PTCHD3Q3KNS1 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
PTCHD3Q3KNS1 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.54□□□□□ -2
PTCHD3Q3KNS1 RNU4-82P-201ENST00000362443 140 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 RNU4-90P-201ENST00000362773 141 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 VTRNA1-1-201ENST00000363120 99 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 RNU1-23P-201ENST00000363361 144 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 SNORD87-201ENST00000364849 89 ntBASIC2.54□□□□□ -2
PTCHD3Q3KNS1 RNU6-1175P-201ENST00000365200 107 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 170 ms