Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC4.4□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.4□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 Y_RNA.341-201ENST00000365341 102 ntBASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC245047.4-201ENST00000433189 144 ntBASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RNU7-141P-201ENST00000459304 62 ntBASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC006445.1-201ENST00000491925 405 ntBASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC093663.1-201ENST00000497190 394 ntBASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC025754.2-201ENST00000606491 432 ntBASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RMST_8.1-201ENST00000610287 165 ntBASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AL139811.1-201ENST00000424779 2299 ntBASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 MIR450A1-201ENST00000362262 91 ntBASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RNA5SP502-201ENST00000362694 119 ntBASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 Y_RNA.280-201ENST00000364765 112 ntBASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RNU6-629P-201ENST00000384061 103 ntBASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RNU6-880P-201ENST00000384526 107 ntBASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC019205.3-201ENST00000424573 156 ntBASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RPL23AP82-202ENST00000427528 469 ntBASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC012308.1-201ENST00000451232 178 ntBASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC010401.1-201ENST00000463867 348 ntBASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 CENPBD1P1-201ENST00000464061 469 ntBASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RPL36AP21-201ENST00000490372 323 ntBASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 SNORA31.23-201ENST00000517219 133 ntBASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 SCARNA20.6-201ENST00000517251 106 ntBASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC107934.2-201ENST00000518653 310 ntBASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 uc_338.32-201ENST00000615087 172 ntBASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AL121890.5-201ENST00000620848 304 ntBASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC012640.5-201ENST00000623897 319 ntBASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 ADAM3A-203ENST00000461344 2157 ntBASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 SNORD73B-201ENST00000364394 72 ntBASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RNU6-1082P-201ENST00000364574 107 ntBASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 Y_RNA.415-201ENST00000384012 112 ntBASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 MIR549A-201ENST00000385268 96 ntBASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 MIR708-201ENST00000390708 88 ntBASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 SNORA79-201ENST00000408376 140 ntBASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC092047.1-201ENST00000424997 240 ntBASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 Z75741.1-201ENST00000446793 314 ntBASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC010285.1-201ENST00000470580 392 ntBASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC108210.2-201ENST00000503681 201 ntBASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RNU2-60P-201ENST00000517290 128 ntBASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC015712.3-201ENST00000559380 164 ntBASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 CYP4A27P-201ENST00000567218 190 ntBASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 U2.21-201ENST00000637295 81 ntBASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC027290.2-201ENST00000623210 18662 ntBASIC4.36□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AL133412.1-201ENST00000380194 2992 ntBASIC4.36□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC022336.2-201ENST00000568966 2538 ntBASIC4.36□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 FTH1P15-201ENST00000406984 280 ntBASIC4.36□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 HMGN2P30-201ENST00000423237 256 ntBASIC4.36□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC009414.1-201ENST00000427200 443 ntBASIC4.36□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RPL31P41-201ENST00000477967 372 ntBASIC4.36□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 SNORA70.16-201ENST00000516390 95 ntBASIC4.36□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 GTF3AP2-201ENST00000557014 266 ntBASIC4.36□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 MIR4458-201ENST00000578872 75 ntBASIC4.36□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC004832.5-201ENST00000608677 401 ntBASIC4.36□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 MIR6715B-201ENST00000637172 77 ntBASIC4.36□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC138915.1-201ENST00000565427 1685 ntBASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 Y_RNA.120-201ENST00000363304 110 ntBASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 Y_RNA.243-201ENST00000364481 109 ntBASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 Y_RNA.310-201ENST00000365063 113 ntBASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 MIR7-2-201ENST00000384970 110 ntBASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 Y_RNA.630-201ENST00000411370 108 ntBASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RN7SL442P-201ENST00000473804 320 ntBASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RNU1-143P-201ENST00000516296 146 ntBASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC120024.3-201ENST00000603167 156 ntBASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RNA5SP108-201ENST00000605921 117 ntBASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 U1.23-201ENST00000610293 146 ntBASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 RNU1-68P-201ENST00000615382 146 ntBASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 U1.39-201ENST00000621562 146 ntBASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC106754.2-201ENST00000623006 233 ntBASIC4.35□□□□□ -1.71
SENP3-EIF4A1A0A087X0R7 AC006065.5-201ENST00000623427 349 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 185.3 ms