Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 AC010266.2-201ENST00000564741 3255 ntBASIC5.39□□□□□ -1.55
CCDC61Q9Y6R9 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC61Q9Y6R9 RNU1-72P-201ENST00000362976 153 ntBASIC5.39□□□□□ -1.55
CCDC61Q9Y6R9 RNU6-60P-201ENST00000364792 103 ntBASIC5.39□□□□□ -1.55
CCDC61Q9Y6R9 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
CCDC61Q9Y6R9 RPL30P4-201ENST00000429309 333 ntBASIC5.39□□□□□ -1.55
CCDC61Q9Y6R9 AC113410.1-201ENST00000505029 247 ntBASIC5.39□□□□□ -1.55
CCDC61Q9Y6R9 AC026726.1-201ENST00000512859 601 ntBASIC5.39□□□□□ -1.55
CCDC61Q9Y6R9 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC61Q9Y6R9 AC019176.2-201ENST00000611579 315 ntBASIC5.39□□□□□ -1.55
CCDC61Q9Y6R9 MIR376A2-201ENST00000636782 80 ntBASIC5.39□□□□□ -1.55
CCDC61Q9Y6R9 MIR6715B-201ENST00000637172 77 ntBASIC5.39□□□□□ -1.55
CCDC61Q9Y6R9 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
CCDC61Q9Y6R9 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC61Q9Y6R9 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC61Q9Y6R9 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC61Q9Y6R9 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
CCDC61Q9Y6R9 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC61Q9Y6R9 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC61Q9Y6R9 Y_RNA.155-201ENST00000363632 101 ntBASIC5.38□□□□□ -1.55
CCDC61Q9Y6R9 Y_RNA.410-201ENST00000383992 113 ntBASIC5.38□□□□□ -1.55
CCDC61Q9Y6R9 Y_RNA.620-201ENST00000411009 88 ntBASIC5.38□□□□□ -1.55
CCDC61Q9Y6R9 RNU7-14P-201ENST00000459331 62 ntBASIC5.38□□□□□ -1.55
CCDC61Q9Y6R9 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC61Q9Y6R9 MIR4668-201ENST00000582284 70 ntBASIC5.38□□□□□ -1.55
CCDC61Q9Y6R9 MIR3117-201ENST00000584034 78 ntBASIC5.38□□□□□ -1.55
CCDC61Q9Y6R9 5S_rRNA.16-201ENST00000612928 119 ntBASIC5.38□□□□□ -1.55
CCDC61Q9Y6R9 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC61Q9Y6R9 AC009487.4-201ENST00000624969 3585 ntBASIC5.38□□□□□ -1.55
CCDC61Q9Y6R9 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 RNU1-22P-201ENST00000363334 158 ntBASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 MIR577-201ENST00000385196 96 ntBASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 MIR1251-201ENST00000408552 70 ntBASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 SNORA3C-201ENST00000408792 125 ntBASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 Y_RNA.611-201ENST00000410682 108 ntBASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 RNU6-733P-201ENST00000410759 104 ntBASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 AL139247.1-201ENST00000422768 325 ntBASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 AC009238.1-201ENST00000442165 424 ntBASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 AC009237.6-201ENST00000446969 424 ntBASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 RNU1-131P-201ENST00000458943 161 ntBASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 RNA5SP103-201ENST00000459503 118 ntBASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 SNRPGP3-201ENST00000469405 227 ntBASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 Y_RNA.705-201ENST00000516862 110 ntBASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 MIR4305-201ENST00000583252 102 ntBASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 MIR5187-201ENST00000583479 76 ntBASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 AC073308.1-201ENST00000623696 305 ntBASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC61Q9Y6R9 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC61Q9Y6R9 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC5.36□□□□□ -1.55
CCDC61Q9Y6R9 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC61Q9Y6R9 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC61Q9Y6R9 RNU1-57P-201ENST00000384491 166 ntBASIC5.36□□□□□ -1.55
CCDC61Q9Y6R9 MIR147B-201ENST00000390185 80 ntBASIC5.36□□□□□ -1.55
CCDC61Q9Y6R9 Y_RNA.621-201ENST00000411065 96 ntBASIC5.36□□□□□ -1.55
CCDC61Q9Y6R9 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC61Q9Y6R9 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC61Q9Y6R9 AC006160.2-201ENST00000637708 154 ntBASIC5.36□□□□□ -1.55
CCDC61Q9Y6R9 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC61Q9Y6R9 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC61Q9Y6R9 AP001273.1-201ENST00000624493 3152 ntBASIC5.36□□□□□ -1.55
CCDC61Q9Y6R9 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC61Q9Y6R9 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 AC007656.2-201ENST00000624902 4547 ntBASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 AC092435.4-201ENST00000623012 4159 ntBASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 SNORD45B-201ENST00000364617 72 ntBASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 Y_RNA.360-201ENST00000365512 102 ntBASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 MIR518F-201ENST00000384973 87 ntBASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 MIR199A2-201ENST00000385289 110 ntBASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 AL035423.1-201ENST00000420331 213 ntBASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 AC010099.1-201ENST00000455434 375 ntBASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 RNU7-172P-201ENST00000517125 64 ntBASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 IGKV2OR2-8-201ENST00000558710 300 ntBASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 AC012314.7-201ENST00000619693 93 ntBASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC61Q9Y6R9 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC5.34□□□□□ -1.55
CCDC61Q9Y6R9 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC61Q9Y6R9 SNORD32B-201ENST00000364460 84 ntBASIC5.34□□□□□ -1.55
CCDC61Q9Y6R9 RNU6-409P-201ENST00000384114 104 ntBASIC5.34□□□□□ -1.55
CCDC61Q9Y6R9 SNORD38C-201ENST00000384381 69 ntBASIC5.34□□□□□ -1.55
CCDC61Q9Y6R9 RNU6-887P-201ENST00000410660 100 ntBASIC5.34□□□□□ -1.55
CCDC61Q9Y6R9 AC016717.1-201ENST00000448918 286 ntBASIC5.34□□□□□ -1.55
CCDC61Q9Y6R9 HMGN1P7-201ENST00000491722 313 ntBASIC5.34□□□□□ -1.55
CCDC61Q9Y6R9 RN7SKP57-201ENST00000517248 293 ntBASIC5.34□□□□□ -1.55
CCDC61Q9Y6R9 IGLV3-26-201ENST00000520756 302 ntBASIC5.34□□□□□ -1.55
CCDC61Q9Y6R9 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 216.7 ms