Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
PTCHD3Q3KNS1 MIR449A-201ENST00000362113 91 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-944P-201ENST00000364023 107 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-926P-201ENST00000384075 107 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-220P-201ENST00000390919 107 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 RNU2-63P-201ENST00000410792 194 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 AC004866.1-201ENST00000411748 78 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 AL390729.2-201ENST00000416137 156 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 AC063976.3-201ENST00000426849 329 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 RN7SL297P-201ENST00000483161 293 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 SNORA48.11-201ENST00000517015 89 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 AP003733.2-201ENST00000529409 171 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 AC018448.1-201ENST00000552843 316 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 AC136932.1-201ENST00000574771 208 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 MIR4423-201ENST00000580922 80 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 MIR3162-201ENST00000581818 82 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 MIR3117-201ENST00000584034 78 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 AL357075.2-201ENST00000614906 189 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 AC068205.3-201ENST00000636385 468 ntBASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.63□□□□□ -1.99
PTCHD3Q3KNS1 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 MIR410-201ENST00000362222 80 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 Y_RNA.64-201ENST00000362845 102 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 Y_RNA.143-201ENST00000363520 106 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 Y_RNA.222-201ENST00000364264 102 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 Y_RNA.401-201ENST00000383965 117 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 SNORA67.2-201ENST00000384300 149 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 MIR196B-201ENST00000384852 84 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-121P-201ENST00000410525 99 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 RNA5SP21-201ENST00000410917 96 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 ELOCP21-201ENST00000412558 336 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 ARL5AP4-201ENST00000430731 512 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 AL445687.1-201ENST00000439946 251 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 UQCRBP2-201ENST00000447827 297 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 NDUFB4P10-201ENST00000452541 359 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-408P-201ENST00000515910 100 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 MIR4300-201ENST00000581016 96 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 MIR376A1-201ENST00000616574 68 ntBASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.62□□□□□ -1.99
PTCHD3Q3KNS1 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-626P-201ENST00000363354 107 ntBASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-1180P-201ENST00000364935 107 ntBASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-702P-201ENST00000364982 107 ntBASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 RNU1-109P-201ENST00000383960 147 ntBASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-1310P-201ENST00000384153 107 ntBASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 Y_RNA.498-201ENST00000384460 102 ntBASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 MIR300-201ENST00000401138 83 ntBASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 AL033519.2-201ENST00000403958 392 ntBASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 MIR1302-6-201ENST00000408466 90 ntBASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 AC005002.2-201ENST00000438228 269 ntBASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 CKS1BP2-201ENST00000497342 240 ntBASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 RNU5F-4P-201ENST00000516581 114 ntBASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-1098P-201ENST00000516772 96 ntBASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 AC022616.8-201ENST00000533569 253 ntBASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 AC008873.1-201ENST00000625051 138 ntBASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
PTCHD3Q3KNS1 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-859P-201ENST00000362728 107 ntBASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 Y_RNA.105-201ENST00000363182 111 ntBASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-961P-201ENST00000363893 105 ntBASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-806P-201ENST00000365147 105 ntBASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-234P-201ENST00000365229 104 ntBASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-546P-201ENST00000383991 107 ntBASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-20P-201ENST00000384106 107 ntBASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-574P-201ENST00000384265 107 ntBASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 Y_RNA.518-201ENST00000384552 113 ntBASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 MIR586-201ENST00000385035 97 ntBASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 MIR561-201ENST00000385216 97 ntBASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 RNU6-625P-201ENST00000459412 107 ntBASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 Y_RNA.668-201ENST00000516233 93 ntBASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 RRN3P3-201ENST00000549207 578 ntBASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 MIR4635-201ENST00000583759 79 ntBASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.6□□□□□ -1.99
PTCHD3Q3KNS1 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.59□□□□□ -1.99
PTCHD3Q3KNS1 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 189.8 ms