Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 MIR4666B-201ENST00000578142 81 ntBASIC4.4□□□□□ -1.71
COL9A1P20849 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
COL9A1P20849 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL9A1P20849 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.4□□□□□ -1.71
COL9A1P20849 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL9A1P20849 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL9A1P20849 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
COL9A1P20849 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL9A1P20849 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL9A1P20849 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL9A1P20849 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
COL9A1P20849 RNA5SP151-201ENST00000365632 117 ntBASIC4.39□□□□□ -1.71
COL9A1P20849 RNU6-787P-201ENST00000384032 107 ntBASIC4.39□□□□□ -1.71
COL9A1P20849 Y_RNA.507-201ENST00000384500 99 ntBASIC4.39□□□□□ -1.71
COL9A1P20849 RNU6-1104P-201ENST00000384723 104 ntBASIC4.39□□□□□ -1.71
COL9A1P20849 RNU6-938P-201ENST00000411285 103 ntBASIC4.39□□□□□ -1.71
COL9A1P20849 AC004941.2-201ENST00000427009 228 ntBASIC4.39□□□□□ -1.71
COL9A1P20849 AC099677.2-201ENST00000436385 175 ntBASIC4.39□□□□□ -1.71
COL9A1P20849 RNU1-131P-201ENST00000458943 161 ntBASIC4.39□□□□□ -1.71
COL9A1P20849 RNA5SP57-201ENST00000459463 123 ntBASIC4.39□□□□□ -1.71
COL9A1P20849 MIR3683-201ENST00000580847 82 ntBASIC4.39□□□□□ -1.71
COL9A1P20849 AC091178.1-203ENST00000584586 279 ntBASIC4.39□□□□□ -1.71
COL9A1P20849 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.39□□□□□ -1.71
COL9A1P20849 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL9A1P20849 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL9A1P20849 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.39□□□□□ -1.71
COL9A1P20849 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
COL9A1P20849 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
COL9A1P20849 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.39□□□□□ -1.71
COL9A1P20849 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.39□□□□□ -1.71
COL9A1P20849 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL9A1P20849 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
COL9A1P20849 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL9A1P20849 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL9A1P20849 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL9A1P20849 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL9A1P20849 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL9A1P20849 Y_RNA.73-201ENST00000362910 113 ntBASIC4.38□□□□□ -1.71
COL9A1P20849 RNU6-979P-201ENST00000383896 107 ntBASIC4.38□□□□□ -1.71
COL9A1P20849 RNU6-24P-201ENST00000384440 107 ntBASIC4.38□□□□□ -1.71
COL9A1P20849 AL157831.1-201ENST00000426134 473 ntBASIC4.38□□□□□ -1.71
COL9A1P20849 SNRPGP5-201ENST00000456003 220 ntBASIC4.38□□□□□ -1.71
COL9A1P20849 AC099522.1-202ENST00000514718 367 ntBASIC4.38□□□□□ -1.71
COL9A1P20849 RNU6-857P-201ENST00000515893 110 ntBASIC4.38□□□□□ -1.71
COL9A1P20849 MIR4305-201ENST00000583252 102 ntBASIC4.38□□□□□ -1.71
COL9A1P20849 U7.3-201ENST00000616123 62 ntBASIC4.38□□□□□ -1.71
COL9A1P20849 FAM35CP-201ENST00000554755 2470 ntBASIC4.38□□□□□ -1.71
COL9A1P20849 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.38□□□□□ -1.71
COL9A1P20849 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL9A1P20849 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC4.38□□□□□ -1.71
COL9A1P20849 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL9A1P20849 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.38□□□□□ -1.71
COL9A1P20849 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
COL9A1P20849 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL9A1P20849 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL9A1P20849 AC080128.1-201ENST00000474389 1917 ntBASIC4.37□□□□□ -1.71
COL9A1P20849 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL9A1P20849 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL9A1P20849 AL133243.3-201ENST00000617415 3004 ntBASIC4.37□□□□□ -1.71
COL9A1P20849 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL9A1P20849 SNORA33-201ENST00000363664 130 ntBASIC4.37□□□□□ -1.71
COL9A1P20849 RNU1-133P-201ENST00000364867 167 ntBASIC4.37□□□□□ -1.71
COL9A1P20849 RNA5SP104-201ENST00000410989 118 ntBASIC4.37□□□□□ -1.71
COL9A1P20849 AC009238.1-201ENST00000442165 424 ntBASIC4.37□□□□□ -1.71
COL9A1P20849 AC009237.6-201ENST00000446969 424 ntBASIC4.37□□□□□ -1.71
COL9A1P20849 AC010099.1-201ENST00000455434 375 ntBASIC4.37□□□□□ -1.71
COL9A1P20849 EIF4BP1-201ENST00000554881 351 ntBASIC4.37□□□□□ -1.71
COL9A1P20849 MIR4694-201ENST00000578534 80 ntBASIC4.37□□□□□ -1.71
COL9A1P20849 MIR5588-201ENST00000581890 63 ntBASIC4.37□□□□□ -1.71
COL9A1P20849 MIR3922-201ENST00000585192 84 ntBASIC4.37□□□□□ -1.71
COL9A1P20849 AL160290.3-201ENST00000604869 165 ntBASIC4.37□□□□□ -1.71
COL9A1P20849 AC090115.4-201ENST00000609970 188 ntBASIC4.37□□□□□ -1.71
COL9A1P20849 MIR4662A-201ENST00000637499 67 ntBASIC4.37□□□□□ -1.71
COL9A1P20849 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
COL9A1P20849 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
COL9A1P20849 AP000542.2-201ENST00000623199 6179 ntBASIC4.36□□□□□ -1.71
COL9A1P20849 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.36□□□□□ -1.71
COL9A1P20849 ZNF271P-202ENST00000465539 1970 ntBASIC4.36□□□□□ -1.71
COL9A1P20849 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.36□□□□□ -1.71
COL9A1P20849 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
COL9A1P20849 RNU1-14P-201ENST00000362759 152 ntBASIC4.36□□□□□ -1.71
COL9A1P20849 MIR30B-201ENST00000384850 88 ntBASIC4.36□□□□□ -1.71
COL9A1P20849 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC4.36□□□□□ -1.71
COL9A1P20849 RNU7-171P-201ENST00000459581 62 ntBASIC4.36□□□□□ -1.71
COL9A1P20849 AC006445.1-201ENST00000491925 405 ntBASIC4.36□□□□□ -1.71
COL9A1P20849 PPBPP1-201ENST00000510807 373 ntBASIC4.36□□□□□ -1.71
COL9A1P20849 RNA5SP446-201ENST00000515955 82 ntBASIC4.36□□□□□ -1.71
COL9A1P20849 RNU7-6P-201ENST00000516845 62 ntBASIC4.36□□□□□ -1.71
COL9A1P20849 MIR4778-201ENST00000577635 80 ntBASIC4.36□□□□□ -1.71
COL9A1P20849 AC002076.2-201ENST00000617362 122 ntBASIC4.36□□□□□ -1.71
COL9A1P20849 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL9A1P20849 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL9A1P20849 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.36□□□□□ -1.71
COL9A1P20849 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL9A1P20849 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
COL9A1P20849 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL9A1P20849 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
COL9A1P20849 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL9A1P20849 RNA5SP175-201ENST00000364275 119 ntBASIC4.35□□□□□ -1.71
COL9A1P20849 SNORD116-22-201ENST00000384430 92 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 254.1 ms