Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC011406.1-201ENST00000512440 370 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.66□□□□□ -2.14
CCDC43Q96MW1 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.66□□□□□ -2.14
CCDC43Q96MW1 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.66□□□□□ -2.14
CCDC43Q96MW1 AP000942.3-201ENST00000603702 160 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 AP001485.1-201ENST00000604799 199 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 AL512598.1-201ENST00000610158 273 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 AC097520.1-201ENST00000624435 385 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 OR5AK4P-201ENST00000635912 903 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 MTND5P10-201ENST00000603719 1809 ntBASIC1.66□□□□□ -2.14
CCDC43Q96MW1 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.65□□□□□ -2.14
CCDC43Q96MW1 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.65□□□□□ -2.15
CCDC43Q96MW1 MIR320A-201ENST00000385302 82 ntBASIC1.65□□□□□ -2.15
CCDC43Q96MW1 MTCO3P40-201ENST00000392516 676 ntBASIC1.65□□□□□ -2.15
CCDC43Q96MW1 CALM2P3-201ENST00000400429 449 ntBASIC1.65□□□□□ -2.15
CCDC43Q96MW1 AC016717.1-201ENST00000448918 286 ntBASIC1.65□□□□□ -2.15
CCDC43Q96MW1 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.65□□□□□ -2.15
CCDC43Q96MW1 MTCO3P8-201ENST00000453691 755 ntBASIC1.65□□□□□ -2.15
CCDC43Q96MW1 AC083904.1-201ENST00000487828 231 ntBASIC1.65□□□□□ -2.15
CCDC43Q96MW1 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
CCDC43Q96MW1 RRN3P3-201ENST00000549207 578 ntBASIC1.65□□□□□ -2.15
CCDC43Q96MW1 AC026470.2-201ENST00000561492 181 ntBASIC1.65□□□□□ -2.15
CCDC43Q96MW1 CPDP1-201ENST00000579660 283 ntBASIC1.65□□□□□ -2.15
CCDC43Q96MW1 MIR4422-201ENST00000581938 83 ntBASIC1.65□□□□□ -2.15
CCDC43Q96MW1 AC124864.2-201ENST00000624736 186 ntBASIC1.65□□□□□ -2.15
CCDC43Q96MW1 AC095038.3-201ENST00000634439 195 ntBASIC1.65□□□□□ -2.15
CCDC43Q96MW1 AC100821.1-201ENST00000523153 2479 ntBASIC1.65□□□□□ -2.15
CCDC43Q96MW1 BX322639.1-202ENST00000423987 2213 ntBASIC1.64□□□□□ -2.15
CCDC43Q96MW1 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
CCDC43Q96MW1 MIR378A-201ENST00000362177 66 ntBASIC1.64□□□□□ -2.15
CCDC43Q96MW1 SNORD116-1-201ENST00000384335 95 ntBASIC1.64□□□□□ -2.15
CCDC43Q96MW1 RNU6-997P-201ENST00000384725 107 ntBASIC1.64□□□□□ -2.15
CCDC43Q96MW1 MIR514A2-201ENST00000385131 88 ntBASIC1.64□□□□□ -2.15
CCDC43Q96MW1 MIR514A3-201ENST00000385132 88 ntBASIC1.64□□□□□ -2.15
CCDC43Q96MW1 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.64□□□□□ -2.15
CCDC43Q96MW1 RPS26P42-201ENST00000413485 326 ntBASIC1.64□□□□□ -2.15
CCDC43Q96MW1 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.64□□□□□ -2.15
CCDC43Q96MW1 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.64□□□□□ -2.15
CCDC43Q96MW1 MIR8076-201ENST00000611401 83 ntBASIC1.64□□□□□ -2.15
CCDC43Q96MW1 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
CCDC43Q96MW1 AC073534.2-201ENST00000620377 381 ntBASIC1.64□□□□□ -2.15
CCDC43Q96MW1 MIR8063-201ENST00000621930 81 ntBASIC1.64□□□□□ -2.15
CCDC43Q96MW1 RNA5SP432-201ENST00000362480 116 ntBASIC1.63□□□□□ -2.15
CCDC43Q96MW1 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
CCDC43Q96MW1 MIR450B-201ENST00000401182 78 ntBASIC1.63□□□□□ -2.15
CCDC43Q96MW1 RNU6-1068P-201ENST00000410958 103 ntBASIC1.63□□□□□ -2.15
CCDC43Q96MW1 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC1.63□□□□□ -2.15
CCDC43Q96MW1 SNRPGP13-201ENST00000442212 177 ntBASIC1.63□□□□□ -2.15
CCDC43Q96MW1 AF186996.7-201ENST00000492781 209 ntBASIC1.63□□□□□ -2.15
CCDC43Q96MW1 MTCO1P29-201ENST00000496868 288 ntBASIC1.63□□□□□ -2.15
CCDC43Q96MW1 RNU6-948P-201ENST00000516374 107 ntBASIC1.63□□□□□ -2.15
CCDC43Q96MW1 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.63□□□□□ -2.15
CCDC43Q96MW1 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.63□□□□□ -2.15
CCDC43Q96MW1 AL161670.1-201ENST00000554348 137 ntBASIC1.63□□□□□ -2.15
CCDC43Q96MW1 AC100830.2-201ENST00000581636 240 ntBASIC1.63□□□□□ -2.15
CCDC43Q96MW1 RNU6-89P-201ENST00000606519 100 ntBASIC1.63□□□□□ -2.15
CCDC43Q96MW1 FAM157A-202ENST00000615155 405 ntBASIC1.63□□□□□ -2.15
CCDC43Q96MW1 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.63□□□□□ -2.15
CCDC43Q96MW1 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
CCDC43Q96MW1 ICE2P2-201ENST00000483823 2787 ntBASIC1.63□□□□□ -2.15
CCDC43Q96MW1 Y_RNA.231-201ENST00000364358 102 ntBASIC1.62□□□□□ -2.15
CCDC43Q96MW1 SNORA63D-201ENST00000364359 132 ntBASIC1.62□□□□□ -2.15
CCDC43Q96MW1 SNORD1A-201ENST00000364968 72 ntBASIC1.62□□□□□ -2.15
CCDC43Q96MW1 RNU4-62P-201ENST00000410125 130 ntBASIC1.62□□□□□ -2.15
CCDC43Q96MW1 AC004866.1-201ENST00000411748 78 ntBASIC1.62□□□□□ -2.15
CCDC43Q96MW1 MTCO3P29-201ENST00000432119 779 ntBASIC1.62□□□□□ -2.15
CCDC43Q96MW1 FTH1P12-201ENST00000432137 551 ntBASIC1.62□□□□□ -2.15
CCDC43Q96MW1 OR2AQ1P-201ENST00000451972 200 ntBASIC1.62□□□□□ -2.15
CCDC43Q96MW1 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC1.62□□□□□ -2.15
CCDC43Q96MW1 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.62□□□□□ -2.15
CCDC43Q96MW1 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.62□□□□□ -2.15
CCDC43Q96MW1 RNU2-34P-201ENST00000516534 121 ntBASIC1.62□□□□□ -2.15
CCDC43Q96MW1 Y_RNA.693-201ENST00000516641 110 ntBASIC1.62□□□□□ -2.15
CCDC43Q96MW1 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
CCDC43Q96MW1 AC026371.1-201ENST00000551867 419 ntBASIC1.62□□□□□ -2.15
CCDC43Q96MW1 AL512360.1-201ENST00000555346 234 ntBASIC1.62□□□□□ -2.15
CCDC43Q96MW1 AC245008.1-201ENST00000608123 476 ntBASIC1.62□□□□□ -2.15
CCDC43Q96MW1 MIR338-201ENST00000636369 67 ntBASIC1.62□□□□□ -2.15
CCDC43Q96MW1 ZNF209P-201ENST00000593450 2304 ntBASIC1.62□□□□□ -2.15
CCDC43Q96MW1 Y_RNA.51-201ENST00000362725 102 ntBASIC1.61□□□□□ -2.15
CCDC43Q96MW1 RNU6-522P-201ENST00000364497 107 ntBASIC1.61□□□□□ -2.15
CCDC43Q96MW1 RNU6-975P-201ENST00000384296 105 ntBASIC1.61□□□□□ -2.15
CCDC43Q96MW1 RNU6-784P-201ENST00000384330 106 ntBASIC1.61□□□□□ -2.15
CCDC43Q96MW1 RNU6-933P-201ENST00000384424 107 ntBASIC1.61□□□□□ -2.15
CCDC43Q96MW1 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.61□□□□□ -2.15
CCDC43Q96MW1 AC009237.7-201ENST00000447357 229 ntBASIC1.61□□□□□ -2.15
CCDC43Q96MW1 NFU1P2-201ENST00000448700 469 ntBASIC1.61□□□□□ -2.15
CCDC43Q96MW1 AC009474.2-201ENST00000451383 136 ntBASIC1.61□□□□□ -2.15
CCDC43Q96MW1 RN7SKP210-201ENST00000459176 261 ntBASIC1.61□□□□□ -2.15
CCDC43Q96MW1 AC007215.1-201ENST00000464893 276 ntBASIC1.61□□□□□ -2.15
CCDC43Q96MW1 RPS26P55-201ENST00000471178 356 ntBASIC1.61□□□□□ -2.15
CCDC43Q96MW1 FO393415.2-201ENST00000480085 343 ntBASIC1.61□□□□□ -2.15
CCDC43Q96MW1 AC107401.1-201ENST00000503426 685 ntBASIC1.61□□□□□ -2.15
CCDC43Q96MW1 RNA5SP481-201ENST00000516814 122 ntBASIC1.61□□□□□ -2.15
CCDC43Q96MW1 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.61□□□□□ -2.15
CCDC43Q96MW1 MTND1P35-201ENST00000526739 508 ntBASIC1.61□□□□□ -2.15
CCDC43Q96MW1 AC146944.4-201ENST00000602697 718 ntBASIC1.61□□□□□ -2.15
CCDC43Q96MW1 AL359880.1-201ENST00000621879 266 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 169.5 ms