Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RNU6-1227P-201ENST00000383981 107 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 Y_RNA.431-201ENST00000384086 102 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 RNU6-890P-201ENST00000384121 107 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 RNU6-790P-201ENST00000384479 105 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 MIR676-201ENST00000390702 67 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 AC243428.1-201ENST00000421099 264 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 AL133396.1-201ENST00000432048 687 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 RPS29P27-201ENST00000463711 170 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 RPL9P9-202ENST00000466501 579 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 AC140059.1-201ENST00000489238 361 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 AK3P2-201ENST00000507976 429 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 AC097473.1-201ENST00000508142 408 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 MRPS17P9-201ENST00000511924 393 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 RNU6-377P-201ENST00000515965 102 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 SCARNA15.1-201ENST00000516384 125 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 SNORA25.15-201ENST00000516487 89 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 SCARNA16.2-201ENST00000516520 172 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 Y_RNA.708-201ENST00000516950 96 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 AP003072.1-201ENST00000531740 145 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 MIR5690-201ENST00000583739 73 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 AC090971.5-201ENST00000621102 293 ntBASIC1.73□□□□□ -2.13
HOXC4P09017 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
HOXC4P09017 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.73□□□□□ -2.13
HOXC4P09017 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
HOXC4P09017 Y_RNA.2-201ENST00000362330 96 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 RNU1-17P-201ENST00000363022 152 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 RNU6-105P-201ENST00000363909 104 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 RNU6-593P-201ENST00000364716 112 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 Y_RNA.326-201ENST00000365176 113 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 RNU6-692P-201ENST00000384496 107 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 MIR561-201ENST00000385216 97 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 AL627390.1-201ENST00000396055 340 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 RNA5SP489-201ENST00000410986 109 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.72□□□□□ -2.13
HOXC4P09017 RPL31P63-201ENST00000422565 375 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 MTND3P9-201ENST00000429526 346 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 AC005534.2-201ENST00000431047 433 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC1.72□□□□□ -2.13
HOXC4P09017 Y_RNA.639-201ENST00000458981 102 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 RNU6-1037P-201ENST00000459571 107 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.72□□□□□ -2.13
HOXC4P09017 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.72□□□□□ -2.13
HOXC4P09017 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.72□□□□□ -2.13
HOXC4P09017 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.72□□□□□ -2.13
HOXC4P09017 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.72□□□□□ -2.13
HOXC4P09017 AC109446.1-201ENST00000566172 220 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 MIR3171-201ENST00000584270 74 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
HOXC4P09017 AC022432.1-201ENST00000595739 310 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 SNRPGP17-201ENST00000603780 214 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 PISRT1.1-201ENST00000616930 107 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 uc_338.22-201ENST00000622722 187 ntBASIC1.72□□□□□ -2.13
HOXC4P09017 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
HOXC4P09017 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.14
HOXC4P09017 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
HOXC4P09017 AC008555.8-201ENST00000623602 2168 ntBASIC1.71□□□□□ -2.14
HOXC4P09017 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
HOXC4P09017 Y_RNA.5-201ENST00000362334 102 ntBASIC1.71□□□□□ -2.14
HOXC4P09017 Y_RNA.146-201ENST00000363549 102 ntBASIC1.71□□□□□ -2.14
HOXC4P09017 Y_RNA.197-201ENST00000364004 102 ntBASIC1.71□□□□□ -2.14
HOXC4P09017 SNORD116-20-201ENST00000384529 92 ntBASIC1.71□□□□□ -2.14
HOXC4P09017 MIR559-201ENST00000385188 96 ntBASIC1.71□□□□□ -2.14
HOXC4P09017 RPS29P13-201ENST00000402041 169 ntBASIC1.71□□□□□ -2.14
HOXC4P09017 AL133475.1-201ENST00000404414 305 ntBASIC1.71□□□□□ -2.14
HOXC4P09017 RNU6-174P-201ENST00000410406 106 ntBASIC1.71□□□□□ -2.14
HOXC4P09017 RNU6-293P-201ENST00000411259 106 ntBASIC1.71□□□□□ -2.14
HOXC4P09017 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.71□□□□□ -2.14
HOXC4P09017 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.71□□□□□ -2.14
HOXC4P09017 AC091874.1-201ENST00000511402 339 ntBASIC1.71□□□□□ -2.14
HOXC4P09017 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.71□□□□□ -2.14
HOXC4P09017 AP004607.1-201ENST00000524456 203 ntBASIC1.71□□□□□ -2.14
HOXC4P09017 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.71□□□□□ -2.14
HOXC4P09017 MIR4419B-201ENST00000577260 68 ntBASIC1.71□□□□□ -2.14
HOXC4P09017 AL713866.2-201ENST00000603579 219 ntBASIC1.71□□□□□ -2.14
HOXC4P09017 MIR502-201ENST00000606349 86 ntBASIC1.71□□□□□ -2.14
HOXC4P09017 SCARNA4-202ENST00000625402 129 ntBASIC1.71□□□□□ -2.14
HOXC4P09017 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.71□□□□□ -2.14
HOXC4P09017 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
HOXC4P09017 RNU6-858P-201ENST00000362436 107 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 RNU6-1115P-201ENST00000362490 106 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 SNORD56.1-201ENST00000362913 68 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 SNORD50.1-201ENST00000362987 71 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 RNU6-527P-201ENST00000363425 104 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 RNA5SP99-201ENST00000364020 114 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 RNA5SP190-201ENST00000365222 118 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 Y_RNA.395-201ENST00000383945 109 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 Y_RNA.533-201ENST00000384596 114 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 MIR521-1-201ENST00000384902 87 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 SNORA67.5-201ENST00000391036 107 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 SNORA75.6-201ENST00000391318 127 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 MIR1302-11-201ENST00000408051 138 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 MIR548P-201ENST00000408336 84 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 MIR1302-9-201ENST00000408365 138 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 MIR1302-10-201ENST00000408734 138 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 PMCHL1-202ENST00000423102 261 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.7□□□□□ -2.14
HOXC4P09017 RPS15AP10-201ENST00000432472 382 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 AC243964.1-201ENST00000441814 261 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 AL118496.2-201ENST00000448300 230 ntBASIC1.7□□□□□ -2.14
HOXC4P09017 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 201.5 ms