Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
CCDC61Q9Y6R9 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC61Q9Y6R9 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC61Q9Y6R9 RNU6-1010P-201ENST00000362757 107 ntBASIC5.56□□□□□ -1.52
CCDC61Q9Y6R9 Y_RNA.426-201ENST00000384068 113 ntBASIC5.56□□□□□ -1.52
CCDC61Q9Y6R9 MIR30B-201ENST00000384850 88 ntBASIC5.56□□□□□ -1.52
CCDC61Q9Y6R9 RNU6-402P-201ENST00000410678 103 ntBASIC5.56□□□□□ -1.52
CCDC61Q9Y6R9 AC096949.1-201ENST00000412047 152 ntBASIC5.56□□□□□ -1.52
CCDC61Q9Y6R9 AL161651.1-201ENST00000440882 223 ntBASIC5.56□□□□□ -1.52
CCDC61Q9Y6R9 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC61Q9Y6R9 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC61Q9Y6R9 CYCSP30-201ENST00000546447 172 ntBASIC5.56□□□□□ -1.52
CCDC61Q9Y6R9 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
CCDC61Q9Y6R9 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC61Q9Y6R9 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC61Q9Y6R9 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC61Q9Y6R9 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 RNU6-888P-201ENST00000363010 101 ntBASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 SNORD115-13-201ENST00000363358 82 ntBASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 RNU6-1099P-201ENST00000363533 107 ntBASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 SNORD115-16-201ENST00000363887 82 ntBASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 Y_RNA.298-201ENST00000364960 107 ntBASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 SNORD115-1-201ENST00000364961 82 ntBASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 SNORD61-201ENST00000384252 73 ntBASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 RNU6-938P-201ENST00000411285 103 ntBASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 SUMO2P16-201ENST00000519475 264 ntBASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 RNU6-91P-201ENST00000607774 107 ntBASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 U6.73-201ENST00000619194 103 ntBASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 AC026523.2-201ENST00000625039 7739 ntBASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC61Q9Y6R9 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 RNU6-117P-201ENST00000365415 107 ntBASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 SNORD24-201ENST00000383884 75 ntBASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 MIR23A-201ENST00000385245 73 ntBASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 AL133475.1-201ENST00000404414 305 ntBASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 MIR1271-201ENST00000408537 86 ntBASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 RN7SKP156-201ENST00000410308 342 ntBASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 AC004941.2-201ENST00000427009 228 ntBASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 RN7SL323P-201ENST00000494712 295 ntBASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 BBX-203ENST00000402543 3980 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC61Q9Y6R9 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC61Q9Y6R9 RNA5SP119-201ENST00000362715 117 ntBASIC5.53□□□□□ -1.52
CCDC61Q9Y6R9 Y_RNA.96-201ENST00000363092 109 ntBASIC5.53□□□□□ -1.52
CCDC61Q9Y6R9 SNORD14D-201ENST00000384390 87 ntBASIC5.53□□□□□ -1.52
CCDC61Q9Y6R9 U8.11-201ENST00000384699 133 ntBASIC5.53□□□□□ -1.52
CCDC61Q9Y6R9 U8.17-201ENST00000391292 132 ntBASIC5.53□□□□□ -1.52
CCDC61Q9Y6R9 U8.18-201ENST00000459285 133 ntBASIC5.53□□□□□ -1.52
CCDC61Q9Y6R9 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC61Q9Y6R9 AC006435.5-201ENST00000624486 112 ntBASIC5.53□□□□□ -1.52
CCDC61Q9Y6R9 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC61Q9Y6R9 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
CCDC61Q9Y6R9 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC61Q9Y6R9 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC61Q9Y6R9 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
CCDC61Q9Y6R9 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 RNU1-15P-201ENST00000353977 144 ntBASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 RNU1-133P-201ENST00000364867 167 ntBASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 RNU6-418P-201ENST00000384035 107 ntBASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 RNA5SP372-201ENST00000390836 115 ntBASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 SNORD77.3-201ENST00000391113 65 ntBASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 SNORA57.3-201ENST00000411095 141 ntBASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 AL441985.1-201ENST00000457727 251 ntBASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 RN7SL807P-201ENST00000470923 297 ntBASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 RNA5SP179-201ENST00000517284 121 ntBASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 AC091167.4-201ENST00000605079 184 ntBASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 MIR7702-201ENST00000621931 59 ntBASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
CCDC61Q9Y6R9 MAPK10-372ENST00000641954 3413 ntBASIC5.51□□□□□ -1.53
CCDC61Q9Y6R9 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC61Q9Y6R9 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC61Q9Y6R9 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC61Q9Y6R9 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
CCDC61Q9Y6R9 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 251.1 ms