Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 CUL1P1-201ENST00000509510 2425 ntBASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 MIR554-201ENST00000384874 96 ntBASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 RNU6-1248P-201ENST00000391096 64 ntBASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 CYCSP4-201ENST00000429682 331 ntBASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 AL121594.1-201ENST00000475906 575 ntBASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 AC104619.4-201ENST00000510773 249 ntBASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 RN7SKP164-201ENST00000516138 266 ntBASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 RNU6-155P-201ENST00000516347 100 ntBASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 SNORA43.2-201ENST00000516652 128 ntBASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 AL138963.2-201ENST00000605137 226 ntBASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 AC069294.1-201ENST00000608397 350 ntBASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 AC073476.4-201ENST00000628409 72 ntBASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC39Q9UFE4 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.9□□□□□ -1.78
CCDC39Q9UFE4 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 SNORD115-8-201ENST00000363856 82 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 SNORD115-38-201ENST00000365037 82 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 Y_RNA.337-201ENST00000365312 102 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 RNU6-142P-201ENST00000384019 107 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 SNORA5A-201ENST00000384111 134 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 RNU6-1144P-201ENST00000384247 104 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 Y_RNA.525-201ENST00000384570 113 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 U3.19-201ENST00000390893 196 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 AC098614.2-201ENST00000426040 255 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 AL357134.1-201ENST00000445848 426 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 U3.44-201ENST00000458938 192 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 U8.19-201ENST00000459095 133 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 RNU7-107P-201ENST00000459121 61 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 RNU6-625P-201ENST00000459412 107 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 AC106707.2-201ENST00000484182 374 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 SCARNA15.2-201ENST00000516409 127 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 RNU6-1198P-201ENST00000516904 67 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 AC115990.1-201ENST00000526957 301 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 AC021269.2-201ENST00000532318 330 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 AC009127.3-201ENST00000570531 403 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 AC010999.1-201ENST00000611856 324 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 AC004467.1-201ENST00000615678 330 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 AC091932.3-201ENST00000624223 323 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC39Q9UFE4 RNA5SP124-201ENST00000362739 110 ntBASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 snoU2_19.4-201ENST00000364329 80 ntBASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 SNORD32A-201ENST00000364805 84 ntBASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 Y_RNA.309-201ENST00000365046 111 ntBASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 RNU6-763P-201ENST00000390865 106 ntBASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 AL358075.3-201ENST00000426289 226 ntBASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 RNU6-1256P-201ENST00000516539 103 ntBASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 RNU1-45P-201ENST00000517191 141 ntBASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 AC016256.1-201ENST00000547971 354 ntBASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 AL020997.2-201ENST00000602607 184 ntBASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 AC024153.1-201ENST00000603103 365 ntBASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 CR392039.5-201ENST00000623201 510 ntBASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 AL034408.1-202ENST00000636088 415 ntBASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 AC009093.8-201ENST00000641769 292 ntBASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 AC091152.2-201ENST00000591628 2569 ntBASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC39Q9UFE4 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 MTND5P32-201ENST00000560711 1802 ntBASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 RNU6-103P-201ENST00000363686 107 ntBASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 RNU6-873P-201ENST00000363833 107 ntBASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 SNORA22-201ENST00000383907 134 ntBASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 RNU6-147P-201ENST00000383983 107 ntBASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 MIR493-201ENST00000385254 89 ntBASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 RPL21P3-201ENST00000395517 478 ntBASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 U3.37-201ENST00000408528 213 ntBASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 RPL23AP95-201ENST00000426806 265 ntBASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 AC007919.1-201ENST00000429380 217 ntBASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 AL356867.1-201ENST00000429623 299 ntBASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 AL133547.1-201ENST00000448546 220 ntBASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 AC146507.2-201ENST00000460608 476 ntBASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 RN7SKP179-201ENST00000516126 217 ntBASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 RNA5SP76-201ENST00000516277 87 ntBASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 AC018448.1-201ENST00000552843 316 ntBASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
CCDC39Q9UFE4 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
CCDC39Q9UFE4 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 222.1 ms