Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 DLEU2_1.2-201ENST00000614667 120 ntBASIC1.89□□□□□ -2.11
CCDC43Q96MW1 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.89□□□□□ -2.11
CCDC43Q96MW1 MIR3974-201ENST00000637126 96 ntBASIC1.89□□□□□ -2.11
CCDC43Q96MW1 AC233981.2-201ENST00000611524 1614 ntBASIC1.88□□□□□ -2.11
CCDC43Q96MW1 Y_RNA.296-201ENST00000364930 108 ntBASIC1.88□□□□□ -2.11
CCDC43Q96MW1 RNA5SP363-201ENST00000365072 115 ntBASIC1.88□□□□□ -2.11
CCDC43Q96MW1 RNA5SP190-201ENST00000365222 118 ntBASIC1.88□□□□□ -2.11
CCDC43Q96MW1 Y_RNA.553-201ENST00000384670 102 ntBASIC1.88□□□□□ -2.11
CCDC43Q96MW1 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
CCDC43Q96MW1 AL606923.1-201ENST00000406616 190 ntBASIC1.88□□□□□ -2.11
CCDC43Q96MW1 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.88□□□□□ -2.11
CCDC43Q96MW1 AC090960.1-201ENST00000421072 306 ntBASIC1.88□□□□□ -2.11
CCDC43Q96MW1 AL606489.2-201ENST00000433886 234 ntBASIC1.88□□□□□ -2.11
CCDC43Q96MW1 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC43Q96MW1 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.88□□□□□ -2.11
CCDC43Q96MW1 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.88□□□□□ -2.11
CCDC43Q96MW1 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.88□□□□□ -2.11
CCDC43Q96MW1 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC43Q96MW1 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC43Q96MW1 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC43Q96MW1 AC104581.2-201ENST00000572227 430 ntBASIC1.88□□□□□ -2.11
CCDC43Q96MW1 RMST_6.1-201ENST00000611980 203 ntBASIC1.88□□□□□ -2.11
CCDC43Q96MW1 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC43Q96MW1 SNORA43.4-201ENST00000629559 138 ntBASIC1.88□□□□□ -2.11
CCDC43Q96MW1 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.88□□□□□ -2.11
CCDC43Q96MW1 Y_RNA.1-201ENST00000352915 104 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 MIR340-201ENST00000362125 95 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 Y_RNA.255-201ENST00000364581 97 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 SNORA12.2-201ENST00000391040 156 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 AP000275.1-201ENST00000411943 390 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 NCOR1P3-201ENST00000420479 303 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC43Q96MW1 MTCO2P3-201ENST00000442543 421 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.87□□□□□ -2.11
CCDC43Q96MW1 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC43Q96MW1 RNU7-14P-201ENST00000459331 62 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 RNU7-138P-201ENST00000459479 64 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 RPL39P5-202ENST00000512505 151 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 RNU6-1098P-201ENST00000516772 96 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC43Q96MW1 EIF4A1P12-201ENST00000551910 141 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 AC021231.3-201ENST00000558497 370 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 AC015712.3-201ENST00000559380 164 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC43Q96MW1 CYP4A27P-201ENST00000567218 190 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 AC006362.1-201ENST00000567392 174 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 AC005786.1-201ENST00000588553 154 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 AC022513.1-201ENST00000624512 117 ntBASIC1.87□□□□□ -2.11
CCDC43Q96MW1 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.87□□□□□ -2.11
CCDC43Q96MW1 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.87□□□□□ -2.11
CCDC43Q96MW1 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC43Q96MW1 AL033519.2-201ENST00000403958 392 ntBASIC1.86□□□□□ -2.11
CCDC43Q96MW1 AC139712.2-201ENST00000424302 339 ntBASIC1.86□□□□□ -2.11
CCDC43Q96MW1 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC43Q96MW1 HMGN2P23-201ENST00000456759 269 ntBASIC1.86□□□□□ -2.11
CCDC43Q96MW1 MTCO2P18-201ENST00000457151 658 ntBASIC1.86□□□□□ -2.11
CCDC43Q96MW1 RNU1-131P-201ENST00000458943 161 ntBASIC1.86□□□□□ -2.11
CCDC43Q96MW1 TOMM22P6-201ENST00000465035 409 ntBASIC1.86□□□□□ -2.11
CCDC43Q96MW1 AC010409.1-201ENST00000487382 476 ntBASIC1.86□□□□□ -2.11
CCDC43Q96MW1 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC43Q96MW1 RNU5F-4P-201ENST00000516581 114 ntBASIC1.86□□□□□ -2.11
CCDC43Q96MW1 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC43Q96MW1 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC1.86□□□□□ -2.11
CCDC43Q96MW1 SUB1P4-201ENST00000566062 339 ntBASIC1.86□□□□□ -2.11
CCDC43Q96MW1 AL158211.1-201ENST00000566763 763 ntBASIC1.86□□□□□ -2.11
CCDC43Q96MW1 MIR4424-201ENST00000585257 86 ntBASIC1.86□□□□□ -2.11
CCDC43Q96MW1 AC087683.1-201ENST00000591187 441 ntBASIC1.86□□□□□ -2.11
CCDC43Q96MW1 AL353997.5-201ENST00000618886 171 ntBASIC1.86□□□□□ -2.11
CCDC43Q96MW1 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.86□□□□□ -2.11
CCDC43Q96MW1 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.86□□□□□ -2.11
CCDC43Q96MW1 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
CCDC43Q96MW1 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.85□□□□□ -2.11
CCDC43Q96MW1 Y_RNA.359-201ENST00000365498 102 ntBASIC1.85□□□□□ -2.11
CCDC43Q96MW1 RNU6-1106P-201ENST00000390845 107 ntBASIC1.85□□□□□ -2.11
CCDC43Q96MW1 AF228730.1-201ENST00000397972 663 ntBASIC1.85□□□□□ -2.11
CCDC43Q96MW1 MIR208B-201ENST00000401172 77 ntBASIC1.85□□□□□ -2.11
CCDC43Q96MW1 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC43Q96MW1 SNORD13-201ENST00000459299 104 ntBASIC1.85□□□□□ -2.11
CCDC43Q96MW1 AC007547.1-201ENST00000462177 490 ntBASIC1.85□□□□□ -2.11
CCDC43Q96MW1 HMGB1P29-201ENST00000505659 499 ntBASIC1.85□□□□□ -2.11
CCDC43Q96MW1 AC010424.1-201ENST00000506336 297 ntBASIC1.85□□□□□ -2.11
CCDC43Q96MW1 AC008834.1-201ENST00000511612 175 ntBASIC1.85□□□□□ -2.11
CCDC43Q96MW1 RNU6-567P-201ENST00000516746 107 ntBASIC1.85□□□□□ -2.11
CCDC43Q96MW1 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC43Q96MW1 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC43Q96MW1 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC43Q96MW1 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC43Q96MW1 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC43Q96MW1 AC010928.2-201ENST00000588017 287 ntBASIC1.85□□□□□ -2.11
CCDC43Q96MW1 VN1R80P-201ENST00000597126 338 ntBASIC1.85□□□□□ -2.11
CCDC43Q96MW1 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.85□□□□□ -2.11
CCDC43Q96MW1 AC006026.1-201ENST00000444025 1803 ntBASIC1.84□□□□□ -2.11
CCDC43Q96MW1 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
CCDC43Q96MW1 SNORA32.2-201ENST00000384049 122 ntBASIC1.84□□□□□ -2.11
CCDC43Q96MW1 RNU6-439P-201ENST00000384188 106 ntBASIC1.84□□□□□ -2.11
CCDC43Q96MW1 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.84□□□□□ -2.11
CCDC43Q96MW1 AC012306.1-201ENST00000423267 114 ntBASIC1.84□□□□□ -2.11
CCDC43Q96MW1 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.84□□□□□ -2.11
CCDC43Q96MW1 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC43Q96MW1 TPTE2P5-203ENST00000458118 728 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 176.1 ms