Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SNORA25.12-201ENST00000516202 82 ntBASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 RNU6-579P-201ENST00000516879 102 ntBASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 AC068657.1-201ENST00000520807 306 ntBASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 ZNF192P1-203ENST00000565888 810 ntBASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 AC005296.1-201ENST00000616145 209 ntBASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 ZNF204P-201ENST00000416749 2397 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 Y_RNA.121-201ENST00000363309 113 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 RN7SKP280-201ENST00000364196 304 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 RNU5E-7P-201ENST00000365290 117 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 SNORA20-201ENST00000384662 132 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 SNORA57.1-201ENST00000391227 145 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 AC093578.1-201ENST00000415219 368 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 RPL30P13-201ENST00000418873 348 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 PTGES3P4-201ENST00000426243 356 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 CYCSP32-201ENST00000440548 321 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 HMGN1P18-201ENST00000457642 277 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 AP002884.2-201ENST00000471647 395 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 AC084357.1-201ENST00000473404 255 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 HSPE1P6-201ENST00000479457 291 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 RPL23AP49-201ENST00000492925 468 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 UBE2CP3-201ENST00000502715 450 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 RNU7-121P-201ENST00000516604 62 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 AC002545.1-201ENST00000592511 181 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 AL645944.1-201ENST00000603857 493 ntBASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC39Q9UFE4 AC007656.2-201ENST00000624902 4547 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 MIR1193-201ENST00000408109 78 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 RNU6-1001P-201ENST00000411265 100 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 RAB9AP3-201ENST00000412737 573 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 RAB9AP1-201ENST00000449393 573 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 FABP5P15-201ENST00000453566 214 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 HMGN2P16-201ENST00000456802 261 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 AC021205.2-201ENST00000480069 347 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 AF186996.7-201ENST00000492781 209 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 CYCTP-201ENST00000504253 315 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 RNU2-27P-201ENST00000516185 142 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 RNU6-191P-201ENST00000516295 94 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 SNORA64.4-201ENST00000516632 81 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 DEFB131C-201ENST00000528817 165 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 CARD18-203ENST00000532895 422 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 AL391261.3-201ENST00000557194 520 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 AC005176.2-201ENST00000596933 147 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 AL008718.3-201ENST00000610217 321 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 AC009812.4-201ENST00000569134 1805 ntBASIC4.05□□□□□ -1.76
CCDC39Q9UFE4 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 RNA5SP383-201ENST00000362934 120 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 RNU4-80P-201ENST00000363200 141 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 RNU4-11P-201ENST00000365287 132 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 RNU6-898P-201ENST00000365627 104 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 MIR539-201ENST00000365690 78 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 RNU6-1056P-201ENST00000383996 107 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 RNU6-281P-201ENST00000384212 103 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 U8.11-201ENST00000384699 133 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 U8.12-201ENST00000384701 133 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 MIR10B-201ENST00000385011 110 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 MIR329-1-201ENST00000385028 80 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 MIR34A-201ENST00000385130 110 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 AC016925.1-201ENST00000458303 298 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 U8.18-201ENST00000459285 133 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 MIR2276-201ENST00000516886 89 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 MIR5695-201ENST00000579717 85 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 AC090616.3-201ENST00000582184 217 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 AC099778.2-201ENST00000610904 211 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 AP003355.3-201ENST00000623465 114 ntBASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC39Q9UFE4 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 167.4 ms