Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC005908.1-201ENST00000468701 347 ntBASIC1.14□□□□□ -2.23
SHANK3Q9BYB0 AC027575.1-201ENST00000481064 460 ntBASIC1.14□□□□□ -2.23
SHANK3Q9BYB0 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.14□□□□□ -2.23
SHANK3Q9BYB0 MTCO3P9-201ENST00000506989 781 ntBASIC1.14□□□□□ -2.23
SHANK3Q9BYB0 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC1.14□□□□□ -2.23
SHANK3Q9BYB0 AP005639.2-201ENST00000527592 928 ntBASIC1.14□□□□□ -2.23
SHANK3Q9BYB0 ZNF519P3-201ENST00000557158 1032 ntBASIC1.14□□□□□ -2.23
SHANK3Q9BYB0 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.14□□□□□ -2.23
SHANK3Q9BYB0 MIR3198-2-201ENST00000577868 80 ntBASIC1.14□□□□□ -2.23
SHANK3Q9BYB0 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC1.14□□□□□ -2.23
SHANK3Q9BYB0 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.14□□□□□ -2.23
SHANK3Q9BYB0 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.14□□□□□ -2.23
SHANK3Q9BYB0 AC138649.3-201ENST00000622154 254 ntBASIC1.14□□□□□ -2.23
SHANK3Q9BYB0 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
SHANK3Q9BYB0 SNORD14B-201ENST00000364533 90 ntBASIC1.13□□□□□ -2.23
SHANK3Q9BYB0 RNU6-809P-201ENST00000384461 107 ntBASIC1.13□□□□□ -2.23
SHANK3Q9BYB0 RNU6ATAC4P-201ENST00000387446 126 ntBASIC1.13□□□□□ -2.23
SHANK3Q9BYB0 MIR1283-2-201ENST00000408621 87 ntBASIC1.13□□□□□ -2.23
SHANK3Q9BYB0 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.13□□□□□ -2.23
SHANK3Q9BYB0 AC104136.1-201ENST00000512969 394 ntBASIC1.13□□□□□ -2.23
SHANK3Q9BYB0 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.13□□□□□ -2.23
SHANK3Q9BYB0 BNIP3P25-201ENST00000596023 559 ntBASIC1.13□□□□□ -2.23
SHANK3Q9BYB0 AC245884.10-201ENST00000597355 337 ntBASIC1.13□□□□□ -2.23
SHANK3Q9BYB0 RNU6-655P-201ENST00000362858 107 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 RNU5E-7P-201ENST00000365290 117 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 RNU2-3P-201ENST00000410144 191 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 OR6C66P-201ENST00000414917 930 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AL593851.1-201ENST00000426171 157 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 MED13P1-201ENST00000428342 171 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 RPS15AP10-201ENST00000432472 382 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AC112492.4-201ENST00000456549 352 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 PRELID3BP1-201ENST00000457142 540 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 PTP4A1P4-201ENST00000512479 322 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 Y_RNA.672-201ENST00000516289 104 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 MRPS36P3-201ENST00000519284 130 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AC034114.1-201ENST00000520293 285 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AC022254.1-201ENST00000567857 235 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AC008521.1-201ENST00000587471 187 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AC073410.2-201ENST00000603240 332 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AL136363.2-201ENST00000604173 851 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 MIR338-201ENST00000636369 67 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 MTND5P17-201ENST00000418405 1603 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 RNU1-23P-201ENST00000363361 144 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 RNU6-660P-201ENST00000364566 109 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 Y_RNA.480-201ENST00000384364 102 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 RNU6-1222P-201ENST00000384615 107 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AL591043.1-201ENST00000432461 424 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AK3P2-201ENST00000507976 429 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 MTCYBP40-201ENST00000509390 1135 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 RNU5F-2P-201ENST00000516066 82 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 SNORA43.2-201ENST00000516652 128 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 CYCSP27-201ENST00000527643 293 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AP003181.2-201ENST00000528941 181 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 MIR4299-201ENST00000577899 72 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 MIR3682-201ENST00000581338 84 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 MIR548AC-201ENST00000585049 88 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AC012065.4-201ENST00000602445 679 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 CYP2C61P-201ENST00000604072 290 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AC009229.3-201ENST00000608056 282 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 AC093788.1-201ENST00000609356 927 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC1.12□□□□□ -2.23
SHANK3Q9BYB0 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 RNU6-108P-201ENST00000365558 107 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 RNU6-641P-201ENST00000384006 107 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 RNU6-533P-201ENST00000384144 107 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 SNORD14D-201ENST00000384390 87 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 RNU6-160P-201ENST00000384591 107 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 MIR10A-201ENST00000385043 110 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 RPS3AP36-201ENST00000398190 775 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 UBE2V1P4-201ENST00000425374 344 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 AL033528.1-201ENST00000453780 140 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 AC011005.2-201ENST00000487324 359 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 AC074344.1-201ENST00000512823 224 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 RN7SKP179-201ENST00000516126 217 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 Y_RNA.687-201ENST00000516558 91 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 AC233702.2-202ENST00000562547 291 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 247.9 ms