Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.06□□□□□ -2.08
CCDC43Q96MW1 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC43Q96MW1 AC104564.1-201ENST00000493028 407 ntBASIC2.06□□□□□ -2.08
CCDC43Q96MW1 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC43Q96MW1 MIR449C-201ENST00000516047 92 ntBASIC2.06□□□□□ -2.08
CCDC43Q96MW1 RNU6-430P-201ENST00000517078 107 ntBASIC2.06□□□□□ -2.08
CCDC43Q96MW1 SNORA25.17-201ENST00000517184 124 ntBASIC2.06□□□□□ -2.08
CCDC43Q96MW1 AP005639.2-201ENST00000527592 928 ntBASIC2.06□□□□□ -2.08
CCDC43Q96MW1 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.06□□□□□ -2.08
CCDC43Q96MW1 AC104984.5-201ENST00000586878 94 ntBASIC2.06□□□□□ -2.08
CCDC43Q96MW1 AC018889.1-201ENST00000605372 397 ntBASIC2.06□□□□□ -2.08
CCDC43Q96MW1 AC008536.2-201ENST00000607284 349 ntBASIC2.06□□□□□ -2.08
CCDC43Q96MW1 AL022345.1-201ENST00000607292 135 ntBASIC2.06□□□□□ -2.08
CCDC43Q96MW1 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC43Q96MW1 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.06□□□□□ -2.08
CCDC43Q96MW1 AC005296.1-201ENST00000616145 209 ntBASIC2.06□□□□□ -2.08
CCDC43Q96MW1 AC136475.10-201ENST00000620253 385 ntBASIC2.06□□□□□ -2.08
CCDC43Q96MW1 AC091932.3-201ENST00000624223 323 ntBASIC2.06□□□□□ -2.08
CCDC43Q96MW1 AC241585.2-209ENST00000638217 143 ntBASIC2.06□□□□□ -2.08
CCDC43Q96MW1 RNU1-58P-201ENST00000362413 163 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 SNORA16.1-201ENST00000364597 132 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 RNU6-43P-201ENST00000384302 107 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 SNORA12-201ENST00000391162 147 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 RNA5SP212-201ENST00000391223 107 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC43Q96MW1 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC43Q96MW1 AC010975.2-201ENST00000427781 588 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.05□□□□□ -2.08
CCDC43Q96MW1 USP9YP29-201ENST00000445112 563 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC2.05□□□□□ -2.08
CCDC43Q96MW1 GMFBP1-201ENST00000467831 427 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC43Q96MW1 AC145146.1-201ENST00000496370 254 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.05□□□□□ -2.08
CCDC43Q96MW1 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC43Q96MW1 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC43Q96MW1 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC43Q96MW1 AP005435.4-201ENST00000529514 284 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.05□□□□□ -2.08
CCDC43Q96MW1 TRAV32-201ENST00000553993 340 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC43Q96MW1 AC007375.1-201ENST00000554513 578 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC43Q96MW1 AC008752.3-201ENST00000588113 712 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 BNIP3P16-201ENST00000589779 534 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 AC068790.2-201ENST00000602601 557 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 AL034555.1-201ENST00000604816 211 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 MIR6845-201ENST00000613182 61 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 SNORD98-201ENST00000636377 67 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 CENPCP1-201ENST00000533085 2578 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 ZNF680P1-201ENST00000436625 1469 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 KPNA2P1-201ENST00000458289 1591 ntBASIC2.05□□□□□ -2.08
CCDC43Q96MW1 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC2.04□□□□□ -2.08
CCDC43Q96MW1 U8.13-201ENST00000390842 128 ntBASIC2.04□□□□□ -2.08
CCDC43Q96MW1 RNU2-29P-201ENST00000410423 189 ntBASIC2.04□□□□□ -2.08
CCDC43Q96MW1 RNA5SP501-201ENST00000410990 112 ntBASIC2.04□□□□□ -2.08
CCDC43Q96MW1 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC43Q96MW1 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.04□□□□□ -2.08
CCDC43Q96MW1 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.04□□□□□ -2.08
CCDC43Q96MW1 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC43Q96MW1 AL360221.1-201ENST00000445989 335 ntBASIC2.04□□□□□ -2.08
CCDC43Q96MW1 AL031274.1-201ENST00000450334 232 ntBASIC2.04□□□□□ -2.08
CCDC43Q96MW1 RNA5SP57-201ENST00000459463 123 ntBASIC2.04□□□□□ -2.08
CCDC43Q96MW1 AC022447.4-201ENST00000504053 364 ntBASIC2.04□□□□□ -2.08
CCDC43Q96MW1 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.04□□□□□ -2.08
CCDC43Q96MW1 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC43Q96MW1 AGGF1P4-201ENST00000568249 801 ntBASIC2.04□□□□□ -2.08
CCDC43Q96MW1 AL391840.1-201ENST00000571144 367 ntBASIC2.04□□□□□ -2.08
CCDC43Q96MW1 MIR4528-201ENST00000577763 90 ntBASIC2.04□□□□□ -2.08
CCDC43Q96MW1 RSL24D1P11-201ENST00000591045 491 ntBASIC2.04□□□□□ -2.08
CCDC43Q96MW1 BNIP3P25-201ENST00000596023 559 ntBASIC2.04□□□□□ -2.08
CCDC43Q96MW1 AC121247.2-201ENST00000604776 136 ntBASIC2.04□□□□□ -2.08
CCDC43Q96MW1 AC025754.2-201ENST00000606491 432 ntBASIC2.04□□□□□ -2.08
CCDC43Q96MW1 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC43Q96MW1 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
CCDC43Q96MW1 RNU6-1120P-201ENST00000362988 108 ntBASIC2.03□□□□□ -2.08
CCDC43Q96MW1 Y_RNA.99-201ENST00000363138 105 ntBASIC2.03□□□□□ -2.08
CCDC43Q96MW1 RNU6-348P-201ENST00000384386 107 ntBASIC2.03□□□□□ -2.08
CCDC43Q96MW1 MTATP6P18-201ENST00000417994 673 ntBASIC2.03□□□□□ -2.08
CCDC43Q96MW1 RPL7P54-201ENST00000438336 674 ntBASIC2.03□□□□□ -2.08
CCDC43Q96MW1 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.03□□□□□ -2.08
CCDC43Q96MW1 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC43Q96MW1 AC013470.1-201ENST00000453438 462 ntBASIC2.03□□□□□ -2.08
CCDC43Q96MW1 SNRPFP3-201ENST00000457792 225 ntBASIC2.03□□□□□ -2.08
CCDC43Q96MW1 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.03□□□□□ -2.08
CCDC43Q96MW1 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC43Q96MW1 AC105417.1-201ENST00000514691 285 ntBASIC2.03□□□□□ -2.08
CCDC43Q96MW1 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.03□□□□□ -2.08
CCDC43Q96MW1 RN7SKP219-201ENST00000516825 296 ntBASIC2.03□□□□□ -2.08
CCDC43Q96MW1 RNU6-548P-201ENST00000517083 115 ntBASIC2.03□□□□□ -2.08
CCDC43Q96MW1 MTCO2P4-201ENST00000517968 247 ntBASIC2.03□□□□□ -2.08
CCDC43Q96MW1 AC022880.1-201ENST00000534017 973 ntBASIC2.03□□□□□ -2.08
CCDC43Q96MW1 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC43Q96MW1 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.03□□□□□ -2.08
CCDC43Q96MW1 AP000654.2-201ENST00000605633 586 ntBASIC2.03□□□□□ -2.08
CCDC43Q96MW1 AC109347.2-201ENST00000610220 349 ntBASIC2.03□□□□□ -2.08
CCDC43Q96MW1 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
CCDC43Q96MW1 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.03□□□□□ -2.08
CCDC43Q96MW1 MIR7843-201ENST00000622274 79 ntBASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 225.1 ms