Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AL049545.1-201ENST00000401856 572 ntBASIC2.1□□□□□ -2.07
CCDC43Q96MW1 RNU2-40P-201ENST00000410833 196 ntBASIC2.1□□□□□ -2.07
CCDC43Q96MW1 AL590556.1-201ENST00000423231 483 ntBASIC2.1□□□□□ -2.07
CCDC43Q96MW1 CBX3P6-201ENST00000430257 527 ntBASIC2.1□□□□□ -2.07
CCDC43Q96MW1 AL358934.1-201ENST00000432346 324 ntBASIC2.1□□□□□ -2.07
CCDC43Q96MW1 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC43Q96MW1 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC43Q96MW1 RPS27AP8-201ENST00000452665 445 ntBASIC2.1□□□□□ -2.07
CCDC43Q96MW1 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.1□□□□□ -2.07
CCDC43Q96MW1 MTCO2P6-201ENST00000463134 685 ntBASIC2.1□□□□□ -2.07
CCDC43Q96MW1 SNRPGP7-201ENST00000469016 106 ntBASIC2.1□□□□□ -2.07
CCDC43Q96MW1 RPL21P99-201ENST00000480369 423 ntBASIC2.1□□□□□ -2.07
CCDC43Q96MW1 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
CCDC43Q96MW1 AC110588.1-201ENST00000559699 137 ntBASIC2.1□□□□□ -2.07
CCDC43Q96MW1 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC43Q96MW1 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC43Q96MW1 AC072046.2-201ENST00000618366 268 ntBASIC2.1□□□□□ -2.07
CCDC43Q96MW1 AP000770.2-201ENST00000623694 100 ntBASIC2.1□□□□□ -2.07
CCDC43Q96MW1 AC022418.1-201ENST00000624118 445 ntBASIC2.1□□□□□ -2.07
CCDC43Q96MW1 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
CCDC43Q96MW1 RNU6-434P-201ENST00000384376 107 ntBASIC2.09□□□□□ -2.07
CCDC43Q96MW1 RNU6-692P-201ENST00000384496 107 ntBASIC2.09□□□□□ -2.07
CCDC43Q96MW1 RNU6-1127P-201ENST00000384580 107 ntBASIC2.09□□□□□ -2.07
CCDC43Q96MW1 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
CCDC43Q96MW1 MIR1289-2-201ENST00000408360 111 ntBASIC2.09□□□□□ -2.07
CCDC43Q96MW1 SRIP3-201ENST00000413200 219 ntBASIC2.09□□□□□ -2.07
CCDC43Q96MW1 AC244636.1-201ENST00000421152 228 ntBASIC2.09□□□□□ -2.07
CCDC43Q96MW1 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC43Q96MW1 AC092447.3-201ENST00000426027 686 ntBASIC2.09□□□□□ -2.07
CCDC43Q96MW1 C1DP4-201ENST00000455429 424 ntBASIC2.09□□□□□ -2.07
CCDC43Q96MW1 SCARNA18-201ENST00000459004 134 ntBASIC2.09□□□□□ -2.07
CCDC43Q96MW1 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.09□□□□□ -2.07
CCDC43Q96MW1 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC43Q96MW1 RNU2-69P-201ENST00000516061 100 ntBASIC2.09□□□□□ -2.07
CCDC43Q96MW1 RNU6-991P-201ENST00000516168 107 ntBASIC2.09□□□□□ -2.07
CCDC43Q96MW1 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
CCDC43Q96MW1 AC115990.1-201ENST00000526957 301 ntBASIC2.09□□□□□ -2.07
CCDC43Q96MW1 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
CCDC43Q96MW1 SUB1P2-201ENST00000556401 297 ntBASIC2.09□□□□□ -2.07
CCDC43Q96MW1 AC025449.1-201ENST00000603896 529 ntBASIC2.09□□□□□ -2.07
CCDC43Q96MW1 MIR6715A-201ENST00000615929 79 ntBASIC2.09□□□□□ -2.07
CCDC43Q96MW1 AC099842.1-201ENST00000619919 596 ntBASIC2.09□□□□□ -2.07
CCDC43Q96MW1 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.08□□□□□ -2.08
CCDC43Q96MW1 AL356292.1-201ENST00000283110 373 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 RNU6-336P-201ENST00000364891 107 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 SNORA8-201ENST00000384574 139 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 MIR597-201ENST00000384968 97 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 MIR504-201ENST00000385065 83 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 SNORA16.2-201ENST00000390991 127 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 RNA5SP465-201ENST00000391195 109 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 SNORA40.18-201ENST00000391200 128 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 RNA5SP489-201ENST00000410986 109 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 RN7SKP142-201ENST00000411236 328 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 AL451074.3-201ENST00000437709 472 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC43Q96MW1 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC43Q96MW1 AC132479.1-201ENST00000449160 144 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 BET1P1-201ENST00000482276 359 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 RPL23AP63-201ENST00000498752 471 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 AC093259.1-201ENST00000509755 300 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 MTND3P5-201ENST00000512798 333 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 RNA5SP182-201ENST00000516064 82 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 RNU6-295P-201ENST00000516901 104 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 AC109479.2-201ENST00000517842 174 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC43Q96MW1 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.08□□□□□ -2.08
CCDC43Q96MW1 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC43Q96MW1 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC43Q96MW1 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC43Q96MW1 AC107304.1-201ENST00000604229 296 ntBASIC2.08□□□□□ -2.08
CCDC43Q96MW1 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
CCDC43Q96MW1 RNU6-606P-201ENST00000384721 111 ntBASIC2.07□□□□□ -2.08
CCDC43Q96MW1 MTCO2P34-201ENST00000421994 607 ntBASIC2.07□□□□□ -2.08
CCDC43Q96MW1 MTCO2P11-201ENST00000431069 680 ntBASIC2.07□□□□□ -2.08
CCDC43Q96MW1 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC43Q96MW1 MTND2P29-201ENST00000438595 412 ntBASIC2.07□□□□□ -2.08
CCDC43Q96MW1 AC003989.2-201ENST00000440224 169 ntBASIC2.07□□□□□ -2.08
CCDC43Q96MW1 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.07□□□□□ -2.08
CCDC43Q96MW1 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.07□□□□□ -2.08
CCDC43Q96MW1 AC079382.1-201ENST00000493346 557 ntBASIC2.07□□□□□ -2.08
CCDC43Q96MW1 AC116337.1-201ENST00000509680 687 ntBASIC2.07□□□□□ -2.08
CCDC43Q96MW1 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC43Q96MW1 AL356057.1-201ENST00000533798 831 ntBASIC2.07□□□□□ -2.08
CCDC43Q96MW1 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.07□□□□□ -2.08
CCDC43Q96MW1 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC43Q96MW1 AC103987.3-201ENST00000582071 292 ntBASIC2.07□□□□□ -2.08
CCDC43Q96MW1 AC011494.1-201ENST00000596454 237 ntBASIC2.07□□□□□ -2.08
CCDC43Q96MW1 AL078605.1-201ENST00000603529 500 ntBASIC2.07□□□□□ -2.08
CCDC43Q96MW1 AC091805.2-201ENST00000603848 235 ntBASIC2.07□□□□□ -2.08
CCDC43Q96MW1 AC002044.1-201ENST00000606707 158 ntBASIC2.07□□□□□ -2.08
CCDC43Q96MW1 AC073114.1-201ENST00000612027 490 ntBASIC2.07□□□□□ -2.08
CCDC43Q96MW1 AC098657.3-201ENST00000620434 263 ntBASIC2.07□□□□□ -2.08
CCDC43Q96MW1 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
CCDC43Q96MW1 RNU4-15P-201ENST00000362613 141 ntBASIC2.06□□□□□ -2.08
CCDC43Q96MW1 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC43Q96MW1 Y_RNA.480-201ENST00000384364 102 ntBASIC2.06□□□□□ -2.08
CCDC43Q96MW1 AL356432.1-201ENST00000405809 419 ntBASIC2.06□□□□□ -2.08
CCDC43Q96MW1 MIR1294-201ENST00000408503 142 ntBASIC2.06□□□□□ -2.08
CCDC43Q96MW1 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC43Q96MW1 MTND4P32-201ENST00000437189 1237 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 202.6 ms