Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AP001893.2-201ENST00000526949 202 ntBASIC2.14□□□□□ -2.07
CCDC43Q96MW1 AC018630.3-201ENST00000542637 96 ntBASIC2.14□□□□□ -2.07
CCDC43Q96MW1 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC43Q96MW1 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC43Q96MW1 NIFKP6-201ENST00000598115 845 ntBASIC2.14□□□□□ -2.07
CCDC43Q96MW1 SNRPGP19-201ENST00000603826 189 ntBASIC2.14□□□□□ -2.07
CCDC43Q96MW1 AL773524.1-201ENST00000614065 229 ntBASIC2.14□□□□□ -2.07
CCDC43Q96MW1 AC120349.3-201ENST00000624377 529 ntBASIC2.14□□□□□ -2.07
CCDC43Q96MW1 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC43Q96MW1 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.14□□□□□ -2.07
CCDC43Q96MW1 AC009487.4-201ENST00000624969 3585 ntBASIC2.14□□□□□ -2.07
CCDC43Q96MW1 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
CCDC43Q96MW1 AC008555.8-201ENST00000623602 2168 ntBASIC2.13□□□□□ -2.07
CCDC43Q96MW1 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
CCDC43Q96MW1 RNU6-393P-201ENST00000384475 107 ntBASIC2.13□□□□□ -2.07
CCDC43Q96MW1 RNU6-1222P-201ENST00000384615 107 ntBASIC2.13□□□□□ -2.07
CCDC43Q96MW1 MIR29C-201ENST00000385231 88 ntBASIC2.13□□□□□ -2.07
CCDC43Q96MW1 MIR1283-2-201ENST00000408621 87 ntBASIC2.13□□□□□ -2.07
CCDC43Q96MW1 RNU4-46P-201ENST00000410818 138 ntBASIC2.13□□□□□ -2.07
CCDC43Q96MW1 IFNA20P-201ENST00000436840 528 ntBASIC2.13□□□□□ -2.07
CCDC43Q96MW1 AL031667.1-201ENST00000440222 725 ntBASIC2.13□□□□□ -2.07
CCDC43Q96MW1 RPL23AP42-201ENST00000471152 471 ntBASIC2.13□□□□□ -2.07
CCDC43Q96MW1 AC009646.1-201ENST00000510455 318 ntBASIC2.13□□□□□ -2.07
CCDC43Q96MW1 RNU5F-2P-201ENST00000516066 82 ntBASIC2.13□□□□□ -2.07
CCDC43Q96MW1 OR11H5P-201ENST00000554039 926 ntBASIC2.13□□□□□ -2.07
CCDC43Q96MW1 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC43Q96MW1 MIR4703-201ENST00000577728 79 ntBASIC2.13□□□□□ -2.07
CCDC43Q96MW1 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC43Q96MW1 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC43Q96MW1 AL109918.3-201ENST00000603072 338 ntBASIC2.13□□□□□ -2.07
CCDC43Q96MW1 DUXAP9-208ENST00000622815 614 ntBASIC2.13□□□□□ -2.07
CCDC43Q96MW1 AC009161.2-201ENST00000624626 138 ntBASIC2.13□□□□□ -2.07
CCDC43Q96MW1 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC43Q96MW1 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
CCDC43Q96MW1 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CCDC43Q96MW1 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.12□□□□□ -2.07
CCDC43Q96MW1 SNORD70.1-201ENST00000391007 85 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 RNU11-3P-201ENST00000391111 133 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 BTF3L4P2-201ENST00000392798 346 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 SUMO2P12-201ENST00000405924 140 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 RNU6-1245P-201ENST00000411130 106 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 AL158823.1-201ENST00000418441 478 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC43Q96MW1 HMGN2P19-201ENST00000425149 265 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC43Q96MW1 AC243964.1-201ENST00000441814 261 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.12□□□□□ -2.07
CCDC43Q96MW1 RPL23AP6-201ENST00000446637 472 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 AC245102.2-201ENST00000448956 180 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 MTND1P27-201ENST00000451117 902 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 AC022364.2-201ENST00000457963 554 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 RN7SL274P-201ENST00000492268 272 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.12□□□□□ -2.07
CCDC43Q96MW1 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC43Q96MW1 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.12□□□□□ -2.07
CCDC43Q96MW1 MRPS17P9-201ENST00000511924 393 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.12□□□□□ -2.07
CCDC43Q96MW1 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.12□□□□□ -2.07
CCDC43Q96MW1 ANP32BP3-201ENST00000559213 706 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 AC005034.5-201ENST00000604219 466 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 AC104073.3-201ENST00000610942 955 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 YWHAEP7-203ENST00000622054 312 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 MIR1248-201ENST00000629190 106 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC43Q96MW1 ZNF355P-201ENST00000427301 3216 ntBASIC2.12□□□□□ -2.07
CCDC43Q96MW1 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.11□□□□□ -2.07
CCDC43Q96MW1 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
CCDC43Q96MW1 SNORD14D-201ENST00000384390 87 ntBASIC2.11□□□□□ -2.07
CCDC43Q96MW1 RNU2-9P-201ENST00000410194 145 ntBASIC2.11□□□□□ -2.07
CCDC43Q96MW1 RNU6-293P-201ENST00000411259 106 ntBASIC2.11□□□□□ -2.07
CCDC43Q96MW1 SNORD56-201ENST00000413522 71 ntBASIC2.11□□□□□ -2.07
CCDC43Q96MW1 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.11□□□□□ -2.07
CCDC43Q96MW1 PRPS1P1-201ENST00000445305 876 ntBASIC2.11□□□□□ -2.07
CCDC43Q96MW1 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.11□□□□□ -2.07
CCDC43Q96MW1 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC43Q96MW1 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC43Q96MW1 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC43Q96MW1 LRRC34P2-201ENST00000514850 553 ntBASIC2.11□□□□□ -2.07
CCDC43Q96MW1 MIR514B-201ENST00000516774 80 ntBASIC2.11□□□□□ -2.07
CCDC43Q96MW1 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC43Q96MW1 AP005660.1-201ENST00000522972 293 ntBASIC2.11□□□□□ -2.07
CCDC43Q96MW1 DUXAP5-201ENST00000529668 529 ntBASIC2.11□□□□□ -2.07
CCDC43Q96MW1 AP002963.1-201ENST00000530590 184 ntBASIC2.11□□□□□ -2.07
CCDC43Q96MW1 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC43Q96MW1 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC43Q96MW1 AC023050.3-201ENST00000541142 333 ntBASIC2.11□□□□□ -2.07
CCDC43Q96MW1 AC040904.1-201ENST00000590850 223 ntBASIC2.11□□□□□ -2.07
CCDC43Q96MW1 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC43Q96MW1 AL096840.1-201ENST00000603287 93 ntBASIC2.11□□□□□ -2.07
CCDC43Q96MW1 AC123912.5-201ENST00000605470 343 ntBASIC2.11□□□□□ -2.07
CCDC43Q96MW1 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC43Q96MW1 AC009318.2-201ENST00000610917 651 ntBASIC2.11□□□□□ -2.07
CCDC43Q96MW1 uc_338.11-201ENST00000619132 160 ntBASIC2.11□□□□□ -2.07
CCDC43Q96MW1 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC43Q96MW1 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.11□□□□□ -2.07
CCDC43Q96MW1 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.1□□□□□ -2.07
CCDC43Q96MW1 AL390237.1-201ENST00000404226 1415 ntBASIC2.1□□□□□ -2.07
CCDC43Q96MW1 RNU6-428P-201ENST00000362942 107 ntBASIC2.1□□□□□ -2.07
CCDC43Q96MW1 RNU6-1285P-201ENST00000363480 105 ntBASIC2.1□□□□□ -2.07
CCDC43Q96MW1 RNU6-1164P-201ENST00000364428 107 ntBASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 195.8 ms