Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC61Q9Y6R9 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC61Q9Y6R9 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
CCDC61Q9Y6R9 RNU2-70P-201ENST00000410718 179 ntBASIC6.09□□□□□ -1.43
CCDC61Q9Y6R9 RPL35AP15-201ENST00000468042 339 ntBASIC6.09□□□□□ -1.43
CCDC61Q9Y6R9 RPL30P5-201ENST00000494923 336 ntBASIC6.09□□□□□ -1.43
CCDC61Q9Y6R9 RNA5SP153-201ENST00000516498 76 ntBASIC6.09□□□□□ -1.43
CCDC61Q9Y6R9 RNU1-103P-201ENST00000516502 125 ntBASIC6.09□□□□□ -1.43
CCDC61Q9Y6R9 AP003357.1-201ENST00000604497 148 ntBASIC6.09□□□□□ -1.43
CCDC61Q9Y6R9 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.44
CCDC61Q9Y6R9 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
CCDC61Q9Y6R9 RNU4-41P-201ENST00000364426 143 ntBASIC6.08□□□□□ -1.44
CCDC61Q9Y6R9 PPIAP31-201ENST00000405422 495 ntBASIC6.08□□□□□ -1.44
CCDC61Q9Y6R9 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC61Q9Y6R9 AL139281.1-201ENST00000422120 335 ntBASIC6.08□□□□□ -1.44
CCDC61Q9Y6R9 COX6CP6-201ENST00000490840 228 ntBASIC6.08□□□□□ -1.44
CCDC61Q9Y6R9 RNA5SP497-201ENST00000516081 97 ntBASIC6.08□□□□□ -1.44
CCDC61Q9Y6R9 IGKV3OR22-2-201ENST00000517943 313 ntBASIC6.08□□□□□ -1.44
CCDC61Q9Y6R9 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC61Q9Y6R9 SNX18P1Y-201ENST00000616231 511 ntBASIC6.08□□□□□ -1.44
CCDC61Q9Y6R9 AL035470.1-201ENST00000622571 220 ntBASIC6.08□□□□□ -1.44
CCDC61Q9Y6R9 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC61Q9Y6R9 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC61Q9Y6R9 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC61Q9Y6R9 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC61Q9Y6R9 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC61Q9Y6R9 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC61Q9Y6R9 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 FTH1P15-201ENST00000406984 280 ntBASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 AC073261.1-201ENST00000429409 121 ntBASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 CALM2P4-201ENST00000430810 426 ntBASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 AC107297.1-201ENST00000459991 176 ntBASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 RPL23AP62-201ENST00000463396 453 ntBASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 RNA5SP49-201ENST00000516450 115 ntBASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 RN7SL600P-201ENST00000581811 299 ntBASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 MIR6134-201ENST00000617606 109 ntBASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 AL022311.1-201ENST00000623726 19416 ntBASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC61Q9Y6R9 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 MIR133A2-201ENST00000347538 102 ntBASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 SNORA48.7-201ENST00000391302 135 ntBASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 MIR891A-201ENST00000401237 79 ntBASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 RNU6-437P-201ENST00000459408 95 ntBASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 ATP5EP1-201ENST00000510257 156 ntBASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 RNU1-117P-201ENST00000517041 158 ntBASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 AC034105.4-201ENST00000568304 277 ntBASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 POLR3GP1-201ENST00000594073 261 ntBASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 AL021997.2-201ENST00000615674 271 ntBASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 AL138880.2-201ENST00000616214 239 ntBASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
CCDC61Q9Y6R9 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 SPRR2C-201ENST00000290702 219 ntBASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 Y_RNA.466-201ENST00000384294 113 ntBASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 MIR153-1-201ENST00000384914 90 ntBASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 RNU6ATAC34P-201ENST00000408879 121 ntBASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 AL356095.1-201ENST00000417217 199 ntBASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 AF228730.3-201ENST00000436691 102 ntBASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 AC091153.1-201ENST00000466297 402 ntBASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 GNRHR2P1-201ENST00000555315 631 ntBASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 MIR3136-201ENST00000583498 78 ntBASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 MIR4660-201ENST00000583549 74 ntBASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
CCDC61Q9Y6R9 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 RNU1-83P-201ENST00000363426 164 ntBASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 RNU6-140P-201ENST00000384566 108 ntBASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 RNU2-32P-201ENST00000411193 191 ntBASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 EIF4A1P3-201ENST00000411521 244 ntBASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 RPL37P4-201ENST00000448908 268 ntBASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 RPL21P129-201ENST00000491732 478 ntBASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 273.9 ms