Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 MIR372-201ENST00000362225 67 ntBASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.273-201ENST00000364703 102 ntBASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.569-201ENST00000384749 103 ntBASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 RNU6-712P-201ENST00000410558 100 ntBASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.623-201ENST00000411128 95 ntBASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 PPP1R11P2-201ENST00000423543 382 ntBASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 AC090774.1-201ENST00000435925 246 ntBASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 RPS15AP34-201ENST00000487776 387 ntBASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 RPL30P1-201ENST00000488676 339 ntBASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 AC022493.1-201ENST00000492984 337 ntBASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 SUMO2P6-201ENST00000505273 288 ntBASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 RNU5F-8P-201ENST00000515941 111 ntBASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC4.31□□□□□ -1.72
CCDC39Q9UFE4 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 AL365440.1-201ENST00000436135 2167 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 SNORA25.1-201ENST00000362326 128 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 SNORA31-201ENST00000362607 130 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.400-201ENST00000383963 111 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 RNU6-213P-201ENST00000384051 104 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 RNU4-30P-201ENST00000410245 143 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 RNU6-628P-201ENST00000410675 107 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 SNORD56-201ENST00000413522 71 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 AC008267.6-201ENST00000441664 139 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 SSXP4-201ENST00000451349 245 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 AC006539.3-201ENST00000454258 129 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 RN7SL385P-201ENST00000468873 276 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 RPS26P21-201ENST00000475397 348 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 RNU7-175P-201ENST00000515915 61 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 RNU6-919P-201ENST00000516731 104 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 NDUFB9P3-201ENST00000521269 501 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 B3GNTL1P2-201ENST00000603673 288 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 AP000787.2-201ENST00000604432 568 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 AL137849.1-201ENST00000604767 169 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 AC084757.4-201ENST00000616350 526 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 ZNF826P-207ENST00000622273 1910 ntBASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC39Q9UFE4 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 AC100821.1-201ENST00000523153 2479 ntBASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 UBE2WP1-201ENST00000362030 340 ntBASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 MIR607-201ENST00000385241 96 ntBASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 SNORA3.3-201ENST00000408712 125 ntBASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 RPL21P40-201ENST00000428586 483 ntBASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 AC005002.2-201ENST00000438228 269 ntBASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 RPL31P13-201ENST00000484151 370 ntBASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 TRAV37-201ENST00000553906 342 ntBASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 AC136624.4-201ENST00000573044 370 ntBASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 AC090617.3-201ENST00000573670 475 ntBASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 SNORD84-203ENST00000584275 78 ntBASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 KLKP1-201ENST00000595979 403 ntBASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 ZYXP1-201ENST00000617638 118 ntBASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 Z99571.1-201ENST00000636677 394 ntBASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC39Q9UFE4 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.261-201ENST00000364631 102 ntBASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 RNA5SP283-201ENST00000365604 119 ntBASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 RNU6-1289P-201ENST00000384431 106 ntBASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 Y_RNA.597-201ENST00000410463 100 ntBASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 AC010154.1-201ENST00000425857 269 ntBASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 AL451062.2-201ENST00000427515 271 ntBASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 snoU13.24-201ENST00000458998 104 ntBASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 AC114982.1-201ENST00000469402 321 ntBASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 AP001025.1-201ENST00000486139 332 ntBASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 RPS27P26-201ENST00000494583 239 ntBASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 RNU6-612P-201ENST00000516909 102 ntBASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 SNORA31.20-201ENST00000517111 133 ntBASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC39Q9UFE4 AC022695.1-201ENST00000522089 237 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 178.3 ms