Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC43Q96MW1 AC026271.5-201ENST00000577873 130 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 MIR4298-201ENST00000584380 73 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 AL670379.2-201ENST00000604983 252 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 Z82243.1-201ENST00000609432 473 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 AC007792.1-201ENST00000623023 402 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.25□□□□□ -2.05
CCDC43Q96MW1 AC131280.1-202ENST00000624067 4211 ntBASIC2.25□□□□□ -2.05
CCDC43Q96MW1 Y_RNA.169-201ENST00000363745 96 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 MIR1-2-201ENST00000384961 85 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 MIR518A2-201ENST00000384966 87 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 SNORA46.1-201ENST00000391069 153 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 RNU2-48P-201ENST00000410694 191 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 RNU6-607P-201ENST00000411283 108 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 OR9R1P-201ENST00000412200 877 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 AL139156.1-201ENST00000412785 841 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 BTF3L4P1-201ENST00000413813 468 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 BX295541.1-201ENST00000417774 250 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 SRIP2-201ENST00000428470 166 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 AL445646.1-201ENST00000431784 216 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC43Q96MW1 AL353752.1-201ENST00000454946 260 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.24□□□□□ -2.05
CCDC43Q96MW1 AL162395.1-201ENST00000457882 422 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 AC010486.2-201ENST00000505572 483 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 MTCYBP40-201ENST00000509390 1135 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 AC074344.1-201ENST00000512823 224 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 SNORA18.6-201ENST00000516792 115 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.24□□□□□ -2.05
CCDC43Q96MW1 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.24□□□□□ -2.05
CCDC43Q96MW1 MIR4775-201ENST00000581168 75 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 AC078899.2-201ENST00000595282 212 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 SNRPGP17-201ENST00000603780 214 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 Z84480.1-201ENST00000605131 311 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 AC004908.3-201ENST00000610248 625 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.24□□□□□ -2.05
CCDC43Q96MW1 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC43Q96MW1 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC43Q96MW1 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC43Q96MW1 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.23□□□□□ -2.05
CCDC43Q96MW1 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC43Q96MW1 AP006437.1-201ENST00000641440 3685 ntBASIC2.23□□□□□ -2.05
CCDC43Q96MW1 snoU2_19.1-201ENST00000362361 80 ntBASIC2.23□□□□□ -2.05
CCDC43Q96MW1 SNORD115-3-201ENST00000363100 82 ntBASIC2.23□□□□□ -2.05
CCDC43Q96MW1 RNU5E-7P-201ENST00000365290 117 ntBASIC2.23□□□□□ -2.05
CCDC43Q96MW1 RNU6-546P-201ENST00000383991 107 ntBASIC2.23□□□□□ -2.05
CCDC43Q96MW1 AC019129.1-201ENST00000403786 261 ntBASIC2.23□□□□□ -2.05
CCDC43Q96MW1 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC43Q96MW1 PMCHL2-203ENST00000457791 237 ntBASIC2.23□□□□□ -2.05
CCDC43Q96MW1 snoU13.14-201ENST00000459372 104 ntBASIC2.23□□□□□ -2.05
CCDC43Q96MW1 AC006512.1-201ENST00000468816 291 ntBASIC2.23□□□□□ -2.05
CCDC43Q96MW1 AC104136.1-201ENST00000512969 394 ntBASIC2.23□□□□□ -2.05
CCDC43Q96MW1 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC43Q96MW1 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC43Q96MW1 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC43Q96MW1 MIR4287-201ENST00000579398 78 ntBASIC2.23□□□□□ -2.05
CCDC43Q96MW1 AC078795.2-201ENST00000602835 1252 ntBASIC2.23□□□□□ -2.05
CCDC43Q96MW1 SEPT7P9-203ENST00000604116 343 ntBASIC2.23□□□□□ -2.05
CCDC43Q96MW1 AC064872.1-201ENST00000604823 1072 ntBASIC2.23□□□□□ -2.05
CCDC43Q96MW1 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC43Q96MW1 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC43Q96MW1 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC43Q96MW1 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC43Q96MW1 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
CCDC43Q96MW1 FGF7P2-201ENST00000332473 296 ntBASIC2.22□□□□□ -2.05
CCDC43Q96MW1 SNORD114-1-201ENST00000362705 72 ntBASIC2.22□□□□□ -2.05
CCDC43Q96MW1 RNU6-527P-201ENST00000363425 104 ntBASIC2.22□□□□□ -2.05
CCDC43Q96MW1 RNU6-1097P-201ENST00000363586 107 ntBASIC2.22□□□□□ -2.05
CCDC43Q96MW1 RNU6-944P-201ENST00000364023 107 ntBASIC2.22□□□□□ -2.05
CCDC43Q96MW1 MIR454-201ENST00000390180 115 ntBASIC2.22□□□□□ -2.05
CCDC43Q96MW1 RNA5SP450-201ENST00000411206 102 ntBASIC2.22□□□□□ -2.05
CCDC43Q96MW1 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC43Q96MW1 HMGN2P38-201ENST00000423806 265 ntBASIC2.22□□□□□ -2.05
CCDC43Q96MW1 RPL39P29-201ENST00000447779 157 ntBASIC2.22□□□□□ -2.05
CCDC43Q96MW1 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC43Q96MW1 RNU7-182P-201ENST00000459009 62 ntBASIC2.22□□□□□ -2.05
CCDC43Q96MW1 RNA5SP269-201ENST00000459032 137 ntBASIC2.22□□□□□ -2.05
CCDC43Q96MW1 YWHAEP4-201ENST00000505390 198 ntBASIC2.22□□□□□ -2.05
CCDC43Q96MW1 RNU6-1178P-201ENST00000516674 107 ntBASIC2.22□□□□□ -2.05
CCDC43Q96MW1 AP003072.2-201ENST00000527756 676 ntBASIC2.22□□□□□ -2.05
CCDC43Q96MW1 AL159153.1-201ENST00000619688 317 ntBASIC2.22□□□□□ -2.05
CCDC43Q96MW1 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC43Q96MW1 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.22□□□□□ -2.05
CCDC43Q96MW1 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC43Q96MW1 AL359851.1-201ENST00000569460 4997 ntBASIC2.21□□□□□ -2.06
CCDC43Q96MW1 RNU6-715P-201ENST00000365204 103 ntBASIC2.21□□□□□ -2.06
CCDC43Q96MW1 RNU6-108P-201ENST00000365558 107 ntBASIC2.21□□□□□ -2.06
CCDC43Q96MW1 RN7SKP284-201ENST00000411002 343 ntBASIC2.21□□□□□ -2.06
CCDC43Q96MW1 EIF1AXP1-201ENST00000419267 435 ntBASIC2.21□□□□□ -2.06
CCDC43Q96MW1 AL591043.1-201ENST00000432461 424 ntBASIC2.21□□□□□ -2.06
CCDC43Q96MW1 DNAJC19P4-201ENST00000440115 345 ntBASIC2.21□□□□□ -2.06
CCDC43Q96MW1 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC43Q96MW1 AC007969.2-201ENST00000441891 191 ntBASIC2.21□□□□□ -2.06
CCDC43Q96MW1 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC43Q96MW1 AL122001.1-201ENST00000457027 370 ntBASIC2.21□□□□□ -2.06
CCDC43Q96MW1 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC43Q96MW1 snoU13.26-201ENST00000459452 105 ntBASIC2.21□□□□□ -2.06
CCDC43Q96MW1 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC43Q96MW1 RNA5SP364-201ENST00000516938 78 ntBASIC2.21□□□□□ -2.06
CCDC43Q96MW1 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 202.6 ms