Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC010329.2-201ENST00000595195 2737 ntBASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 UBE2WP1-201ENST00000362030 340 ntBASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 MIR448-201ENST00000362131 111 ntBASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 Y_RNA.308-201ENST00000365043 101 ntBASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 Y_RNA.534-201ENST00000384599 112 ntBASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 Y_RNA.597-201ENST00000410463 100 ntBASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AL358453.1-201ENST00000422522 250 ntBASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RN7SL601P-201ENST00000471221 293 ntBASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 YWHAEP4-201ENST00000505390 198 ntBASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 YPEL5P3-201ENST00000547227 352 ntBASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC090617.3-201ENST00000573670 475 ntBASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 LARP7P3-201ENST00000579888 337 ntBASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 MIR3922-201ENST00000585192 84 ntBASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC5.19□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC5.18□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RNU5E-9P-201ENST00000411164 104 ntBASIC5.18□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RNA5SP247-201ENST00000411181 105 ntBASIC5.18□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC5.18□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC008065.1-201ENST00000428525 348 ntBASIC5.18□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 HMGB1P25-201ENST00000468402 607 ntBASIC5.18□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 MIR4308-201ENST00000580634 81 ntBASIC5.18□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC5.18□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC244505.7-201ENST00000599675 272 ntBASIC5.18□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC006386.2-201ENST00000624491 75 ntBASIC5.18□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC012005.1-201ENST00000624575 75 ntBASIC5.18□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RNU6-821P-201ENST00000390995 107 ntBASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 TRAPPC2P4-201ENST00000421750 331 ntBASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC010154.1-201ENST00000425857 269 ntBASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RPL21P40-201ENST00000428586 483 ntBASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 SSXP4-201ENST00000451349 245 ntBASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 U8.22-201ENST00000459141 133 ntBASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC091179.1-201ENST00000461606 579 ntBASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RNU1-86P-201ENST00000516108 154 ntBASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 Vault.1-201ENST00000516474 102 ntBASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RNU1-107P-201ENST00000516617 154 ntBASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC018555.1-201ENST00000567548 1980 ntBASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 MAPK10-286ENST00000641208 8747 ntBASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RNU6-1301P-201ENST00000362724 104 ntBASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 Y_RNA.215-201ENST00000364204 112 ntBASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RNU6-827P-201ENST00000365553 106 ntBASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RNU6-21P-201ENST00000384710 107 ntBASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 MIR30B-201ENST00000384850 88 ntBASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 UBA52P6-201ENST00000399822 382 ntBASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RNU5A-5P-201ENST00000411054 116 ntBASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC005002.2-201ENST00000438228 269 ntBASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 SNORD2.1-201ENST00000458762 69 ntBASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC114982.1-201ENST00000469402 321 ntBASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 SRI-210ENST00000490437 570 ntTSL 2 BASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RAC1P2-201ENST00000511164 579 ntBASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RNY3P16-201ENST00000516338 101 ntBASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 SCARNA14-201ENST00000516903 136 ntBASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC5.15□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 U8.11-201ENST00000384699 133 ntBASIC5.15□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 U8.12-201ENST00000384701 133 ntBASIC5.15□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 SNORA46.1-201ENST00000391069 153 ntBASIC5.15□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 SNORD56-201ENST00000413522 71 ntBASIC5.15□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 SNORA71B-202ENST00000439232 272 ntBASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 166.9 ms