Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 U3.13-201ENST00000364804 214 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 RNU6-837P-201ENST00000391056 108 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 U3.39-201ENST00000408569 239 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 RNA5SP56-201ENST00000410277 118 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 RNA5SP494-201ENST00000410653 129 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 AC016397.1-201ENST00000412463 242 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 AC007389.2-201ENST00000434630 306 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 USP9YP7-201ENST00000436723 430 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 USP9YP32-201ENST00000452432 430 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 RNU6-352P-201ENST00000516908 107 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 AC007458.1-201ENST00000542812 373 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 AL442163.3-201ENST00000554110 156 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 MIR5692A1-201ENST00000580523 69 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 BRDTP1-201ENST00000605735 677 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 MIR6868-201ENST00000611215 58 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 MIR6716-201ENST00000613413 80 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 AC034102.8-201ENST00000615146 484 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 AL391261.4-201ENST00000616012 481 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 AC243829.7-201ENST00000633081 225 ntBASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC39Q9UFE4 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 SNORD50.1-201ENST00000362987 71 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 SNORA22C-201ENST00000384614 134 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 RPS26P8-201ENST00000393490 348 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 RNU4-78P-201ENST00000410940 126 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 RPL19P1-201ENST00000411635 428 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 TMEM167AP1-201ENST00000423409 219 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 AC002075.2-201ENST00000425207 252 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 BX679664.1-201ENST00000434429 253 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 AC092573.2-201ENST00000434546 243 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 AC087477.1-201ENST00000465747 340 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 AC133134.1-201ENST00000466800 359 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 RN7SKP83-201ENST00000516512 178 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 AC109479.2-201ENST00000517842 174 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 MRPS18CP4-201ENST00000535821 231 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 RNVU1-4-201ENST00000612985 164 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 CENPF-206ENST00000614578 528 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 CEP170P1-201ENST00000502249 4587 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 SDAD1P2-201ENST00000441308 2028 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 BX322639.1-202ENST00000423987 2213 ntBASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC39Q9UFE4 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 MTND5P9-201ENST00000503854 1755 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 SNORD113-8-201ENST00000363497 74 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 RNU6-288P-201ENST00000363690 104 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 RNU6-263P-201ENST00000363811 107 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 Y_RNA.292-201ENST00000364904 97 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 RNU6-102P-201ENST00000384485 104 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 HLFP1-201ENST00000402375 499 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 HMGB1P37-201ENST00000439613 609 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 AL360271.2-201ENST00000447710 161 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 SNORD116-28-201ENST00000516123 91 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 RNU6-496P-201ENST00000516145 99 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 RNU6-390P-201ENST00000516259 103 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 AC091144.1-201ENST00000519573 138 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 AC098826.3-201ENST00000603823 466 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 MIR15A-201ENST00000607334 83 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 AC006329.2-201ENST00000611491 394 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 MIR6830-201ENST00000636015 70 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 AC007785.2-201ENST00000598627 1916 ntBASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC39Q9UFE4 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 Y_RNA.44-201ENST00000362676 108 ntBASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 Y_RNA.233-201ENST00000364407 101 ntBASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 RNA5SP130-201ENST00000364431 114 ntBASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 RNU6-417P-201ENST00000384712 107 ntBASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 166.2 ms