Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AL031736.2-201ENST00000426573 787 ntBASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AL162389.1-201ENST00000449233 177 ntBASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC010655.1-201ENST00000449336 292 ntBASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 BX510359.1-201ENST00000456973 237 ntBASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC133134.1-201ENST00000466800 359 ntBASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNU6-352P-201ENST00000516908 107 ntBASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC087369.1-201ENST00000520775 996 ntBASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC005951.2-201ENST00000576282 495 ntBASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC025588.3-201ENST00000604182 274 ntBASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 Y_RNA.44-201ENST00000362676 108 ntBASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 Y_RNA.143-201ENST00000363520 106 ntBASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 Y_RNA.383-201ENST00000383855 97 ntBASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNA5SP306-201ENST00000411087 107 ntBASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC092809.3-201ENST00000415453 231 ntBASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RPL21P41-201ENST00000459863 264 ntBASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC010469.2-201ENST00000496412 480 ntBASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC109479.2-201ENST00000517842 174 ntBASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC233702.9-201ENST00000581528 203 ntBASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 Y_RNA.772-201ENST00000606692 102 ntBASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC104465.1-201ENST00000611365 139 ntBASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AL590240.4-201ENST00000616908 390 ntBASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 Y_RNA.398-201ENST00000383952 99 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNU6-1035P-201ENST00000384477 107 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 SNORA22C-201ENST00000384614 134 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNU6-1168P-201ENST00000390831 104 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 U3.29-201ENST00000391296 212 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 Y_RNA.602-201ENST00000410535 92 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RN7SKP51-201ENST00000410781 304 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AL391219.1-201ENST00000422570 483 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 TMEM167AP1-201ENST00000423409 219 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 BX679664.1-201ENST00000434429 253 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC115115.1-201ENST00000449927 248 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 snoU13.7-201ENST00000459220 104 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RPL30P10-201ENST00000488148 337 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNU6-237P-201ENST00000515985 71 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNU7-143P-201ENST00000516781 65 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RN7SKP60-201ENST00000516985 239 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 SNORA31.18-201ENST00000517043 134 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 TRAV32-201ENST00000553993 340 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 MIR7151-201ENST00000617477 60 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AL031601.2-202ENST00000622650 282 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 U6.92-201ENST00000636464 89 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AL773545.4-201ENST00000637262 310 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AL596275.2-204ENST00000641628 552 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AL513478.4-201ENST00000641636 310 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC007785.2-201ENST00000598627 1916 ntBASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC011266.1-201ENST00000624119 3569 ntBASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNA5SP391-201ENST00000363456 119 ntBASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNVU1-3-201ENST00000364313 161 ntBASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 Y_RNA.233-201ENST00000364407 101 ntBASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RPL21P90-201ENST00000415692 466 ntBASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC006517.1-201ENST00000480485 328 ntBASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC099522.1-202ENST00000514718 367 ntBASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 IGKV2D-19-201ENST00000523346 262 ntBASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 MRPS18CP4-201ENST00000535821 231 ntBASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC027288.2-201ENST00000553028 243 ntBASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 MIR5696-201ENST00000578474 85 ntBASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 FAM27D1-201ENST00000612308 341 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 176.6 ms