Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
CCDC61Q9Y6R9 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC61Q9Y6R9 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC61Q9Y6R9 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 RNU1-82P-201ENST00000390851 165 ntBASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 RN7SKP267-201ENST00000410381 285 ntBASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 AC009963.2-201ENST00000453431 138 ntBASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 RN7SKP12-201ENST00000516275 143 ntBASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 SNORA40.13-201ENST00000516379 120 ntBASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 RNA5SP290-201ENST00000517133 127 ntBASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 RNU2-12P-201ENST00000517216 168 ntBASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 ZFRP1-201ENST00000457579 2970 ntBASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC6.55□□□□□ -1.36
CCDC61Q9Y6R9 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 SNORD32A-201ENST00000364805 84 ntBASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 RNU6-756P-201ENST00000383997 107 ntBASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 MLLT10P1-201ENST00000418346 262 ntBASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 HMGN2P32-201ENST00000444648 269 ntBASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 AL132838.2-201ENST00000492041 314 ntBASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 MIR4724-201ENST00000579485 89 ntBASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 MIR4420-201ENST00000583944 77 ntBASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 AC120024.3-201ENST00000603167 156 ntBASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 AC116447.1-201ENST00000613153 453 ntBASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 AC063976.2-201ENST00000425667 3556 ntBASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC6.54□□□□□ -1.36
CCDC61Q9Y6R9 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 RNU6ATAC5P-201ENST00000388104 126 ntBASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 Y_RNA.617-201ENST00000410920 90 ntBASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 AC006028.1-201ENST00000438379 402 ntBASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 AC073073.1-201ENST00000493920 463 ntBASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 RNU6-1146P-201ENST00000516282 102 ntBASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 RNU6-970P-201ENST00000516312 107 ntBASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 AP001781.1-201ENST00000530977 207 ntBASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 AC099669.2-201ENST00000616549 437 ntBASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
CCDC61Q9Y6R9 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.36
CCDC61Q9Y6R9 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 MIR367-201ENST00000362299 68 ntBASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 RNU6-820P-201ENST00000384273 107 ntBASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 SNORD78.1-201ENST00000390866 65 ntBASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 SNORA79-201ENST00000408376 140 ntBASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 U6atac.2-201ENST00000408644 118 ntBASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 AC091390.3-201ENST00000426478 338 ntBASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 RPS26P45-201ENST00000471748 340 ntBASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 RNU5F-2P-201ENST00000516066 82 ntBASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 AC091178.2-201ENST00000584401 117 ntBASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 IPO5P1-202ENST00000600039 287 ntBASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 AC015813.4-201ENST00000610469 179 ntBASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 AC012640.5-201ENST00000623897 319 ntBASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC6.52□□□□□ -1.37
CCDC61Q9Y6R9 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 167.2 ms