Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AL157871.3-201ENST00000557231 293 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 AL359999.1-201ENST00000604513 294 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 AP002360.4-201ENST00000606980 481 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 AL031775.1-201ENST00000607014 887 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 MIR7844-201ENST00000616161 122 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 AC024581.2-201ENST00000619986 252 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 MIR6873-201ENST00000622788 63 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.59□□□□□ -1.99
CCDC43Q96MW1 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC43Q96MW1 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.59□□□□□ -2
CCDC43Q96MW1 AC016717.2-201ENST00000609089 5141 ntBASIC2.59□□□□□ -2
CCDC43Q96MW1 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC43Q96MW1 Y_RNA.33-201ENST00000362591 102 ntBASIC2.58□□□□□ -2
CCDC43Q96MW1 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.58□□□□□ -2
CCDC43Q96MW1 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.58□□□□□ -2
CCDC43Q96MW1 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.58□□□□□ -2
CCDC43Q96MW1 AC007283.2-201ENST00000424739 197 ntBASIC2.58□□□□□ -2
CCDC43Q96MW1 AC119618.1-201ENST00000434191 222 ntBASIC2.58□□□□□ -2
CCDC43Q96MW1 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.58□□□□□ -2
CCDC43Q96MW1 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.58□□□□□ -2
CCDC43Q96MW1 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.58□□□□□ -2
CCDC43Q96MW1 AC090515.1-201ENST00000465295 476 ntBASIC2.58□□□□□ -2
CCDC43Q96MW1 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.58□□□□□ -2
CCDC43Q96MW1 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.58□□□□□ -2
CCDC43Q96MW1 MTND1P24-201ENST00000552175 861 ntBASIC2.58□□□□□ -2
CCDC43Q96MW1 PRELID2P1-201ENST00000552837 301 ntBASIC2.58□□□□□ -2
CCDC43Q96MW1 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.58□□□□□ -2
CCDC43Q96MW1 SNORD53-201ENST00000579969 78 ntBASIC2.58□□□□□ -2
CCDC43Q96MW1 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.58□□□□□ -2
CCDC43Q96MW1 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.58□□□□□ -2
CCDC43Q96MW1 AC092140.2-201ENST00000618027 521 ntBASIC2.58□□□□□ -2
CCDC43Q96MW1 AC017037.3-201ENST00000625016 472 ntBASIC2.58□□□□□ -2
CCDC43Q96MW1 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC43Q96MW1 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
CCDC43Q96MW1 HSPE1P11-201ENST00000339579 310 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 MIR21-201ENST00000362134 72 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 RNU4-1-201ENST00000363925 141 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 SNORA3A-201ENST00000364113 130 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 XGY1-201ENST00000381172 446 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 SNORA67.4-201ENST00000384688 142 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 SNORA80E-201ENST00000384744 137 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.57□□□□□ -2
CCDC43Q96MW1 MRPL42P2-201ENST00000403169 426 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 AF274854.1-201ENST00000413236 615 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.57□□□□□ -2
CCDC43Q96MW1 AL135786.1-201ENST00000415892 214 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.57□□□□□ -2
CCDC43Q96MW1 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC2.57□□□□□ -2
CCDC43Q96MW1 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.57□□□□□ -2
CCDC43Q96MW1 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.57□□□□□ -2
CCDC43Q96MW1 MYL8P-204ENST00000431574 518 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC2.57□□□□□ -2
CCDC43Q96MW1 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.57□□□□□ -2
CCDC43Q96MW1 ZNF736P8Y-201ENST00000451913 669 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 AC112771.1-201ENST00000463581 102 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 MTND4P2-201ENST00000507767 1203 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 AC087241.2-201ENST00000535801 324 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 AL133241.1-201ENST00000556832 487 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 AC025678.1-201ENST00000567861 338 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 AL158032.1-201ENST00000605401 106 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.57□□□□□ -2
CCDC43Q96MW1 AC011890.2-201ENST00000613393 294 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.57□□□□□ -2
CCDC43Q96MW1 AC244517.12-201ENST00000623581 663 ntBASIC2.57□□□□□ -2
CCDC43Q96MW1 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC43Q96MW1 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.56□□□□□ -2
CCDC43Q96MW1 AC073343.1-201ENST00000328239 651 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 RNU5E-5P-201ENST00000365379 116 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.56□□□□□ -2
CCDC43Q96MW1 BTF3P7-201ENST00000407097 488 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.56□□□□□ -2
CCDC43Q96MW1 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC2.56□□□□□ -2
CCDC43Q96MW1 AL589872.1-201ENST00000426602 288 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 UBE2D3P1-201ENST00000436669 444 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC2.56□□□□□ -2
CCDC43Q96MW1 RPL7P12-201ENST00000446719 750 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 AP000797.1-201ENST00000478870 387 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 AC068781.1-201ENST00000488231 618 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.56□□□□□ -2
CCDC43Q96MW1 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.56□□□□□ -2
CCDC43Q96MW1 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.56□□□□□ -2
CCDC43Q96MW1 MRPS33P3-201ENST00000513456 322 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC2.56□□□□□ -2
CCDC43Q96MW1 AP003467.2-201ENST00000520175 319 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 AL512310.1-201ENST00000548639 172 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 AC078814.3-201ENST00000553036 491 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 AC009063.1-201ENST00000563342 702 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 AC004223.4-201ENST00000612426 332 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 AC245884.12-201ENST00000615364 59 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.56□□□□□ -2
CCDC43Q96MW1 AL590808.1-201ENST00000618696 141 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 AC009878.1-201ENST00000621819 340 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 AC024940.5-201ENST00000622889 474 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 AC064859.1-201ENST00000624741 174 ntBASIC2.56□□□□□ -2
CCDC43Q96MW1 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC43Q96MW1 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC43Q96MW1 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
CCDC43Q96MW1 AC005336.3-201ENST00000623833 2679 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 174.1 ms