Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 RNA5SP337-201ENST00000517007 109 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 ACA59.2-201ENST00000517061 156 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 RNU6-1315P-201ENST00000517187 99 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC43Q96MW1 AC002400.1-201ENST00000569310 726 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 AC174048.1-201ENST00000603389 144 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 MIR15A-201ENST00000607334 83 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 AC067747.1-201ENST00000608026 250 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 AC046143.2-201ENST00000609789 160 ntBASIC2.62□□□□□ -1.99
CCDC43Q96MW1 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC43Q96MW1 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC43Q96MW1 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC43Q96MW1 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC43Q96MW1 RNU6-190P-201ENST00000384154 102 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 RPS4XP7-201ENST00000406274 780 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 RNU6-1025P-201ENST00000410629 104 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 Y_RNA.608-201ENST00000410647 95 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 RNU4-53P-201ENST00000410828 140 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 AC107081.1-201ENST00000414975 361 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC43Q96MW1 AC010099.3-201ENST00000423896 409 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC43Q96MW1 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.61□□□□□ -1.99
CCDC43Q96MW1 RPS15AP9-201ENST00000439856 381 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC43Q96MW1 ZNF114P1-201ENST00000453500 292 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 AL139109.1-201ENST00000455491 297 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 RPL36AP48-201ENST00000485521 314 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 RPS3AP22-201ENST00000488297 769 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 AC023194.1-201ENST00000493084 308 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.61□□□□□ -1.99
CCDC43Q96MW1 AP005902.1-201ENST00000521358 186 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 MTCYBP20-201ENST00000524239 1129 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC43Q96MW1 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.61□□□□□ -1.99
CCDC43Q96MW1 AC012213.3-201ENST00000577199 777 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 MIR4446-201ENST00000578505 67 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 MIR1273C-201ENST00000578669 77 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 AC022022.2-201ENST00000602989 360 ntBASIC2.61□□□□□ -1.99
CCDC43Q96MW1 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC43Q96MW1 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC43Q96MW1 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC43Q96MW1 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC43Q96MW1 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC43Q96MW1 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC43Q96MW1 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC43Q96MW1 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 SNORD56.2-201ENST00000363242 71 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 RNU1-51P-201ENST00000365345 176 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 RNU6-748P-201ENST00000384648 107 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 SNORA40C-201ENST00000391285 128 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 AL133475.1-201ENST00000404414 305 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC43Q96MW1 RPS3AP44-201ENST00000425466 790 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 AL078601.1-201ENST00000444542 271 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 IFNA11P-201ENST00000446352 526 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC43Q96MW1 BTF3P15-201ENST00000455606 336 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC43Q96MW1 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.6□□□□□ -1.99
CCDC43Q96MW1 KLF3P2-201ENST00000465138 268 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 AC007182.2-201ENST00000489251 402 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 RPL22P13-201ENST00000493291 347 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC43Q96MW1 AC112673.1-201ENST00000513168 575 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 SMURF2P1-201ENST00000514992 481 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 RNA5SP281-201ENST00000516504 135 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 RNU7-51P-201ENST00000516560 62 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC43Q96MW1 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC43Q96MW1 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC43Q96MW1 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC43Q96MW1 SNORD14A-201ENST00000606526 91 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 RNU6-87P-201ENST00000607561 108 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC43Q96MW1 Z75746.1-201ENST00000440243 2080 ntBASIC2.6□□□□□ -1.99
CCDC43Q96MW1 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC43Q96MW1 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC43Q96MW1 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.59□□□□□ -1.99
CCDC43Q96MW1 RNU5F-7P-201ENST00000363696 115 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 RNU6-166P-201ENST00000384371 107 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 MIR518D-201ENST00000385014 87 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 U3.37-201ENST00000408528 213 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 AC097463.2-201ENST00000421074 142 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 AC003685.2-201ENST00000422795 395 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.59□□□□□ -1.99
CCDC43Q96MW1 RPL23AP30-201ENST00000432419 501 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC43Q96MW1 RPS15AP28-201ENST00000435088 386 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 EPS15P1-201ENST00000448836 336 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 FABP5P13-201ENST00000452144 328 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC43Q96MW1 AC010587.1-201ENST00000505809 469 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 MIR892C-201ENST00000516410 77 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.59□□□□□ -1.99
CCDC43Q96MW1 AP003122.4-201ENST00000530980 758 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 OR5B19P-201ENST00000531766 928 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 CBX3P7-201ENST00000532876 502 ntBASIC2.59□□□□□ -1.99
CCDC43Q96MW1 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 191.3 ms