Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC087190.1-201ENST00000484462 480 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC107032.1-201ENST00000485945 480 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RN7SL812P-201ENST00000493791 279 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC005798.1-201ENST00000513715 387 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNA5SP360-201ENST00000516555 118 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC093023.1-201ENST00000547375 507 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AL137843.1-201ENST00000605078 385 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC005344.1-201ENST00000613391 459 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 LINC02555-201ENST00000563933 1951 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC068254.2-201ENST00000623938 3577 ntBASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNU6-637P-201ENST00000384050 107 ntBASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNU6-933P-201ENST00000384424 107 ntBASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNA5SP293-201ENST00000410527 113 ntBASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC239809.1-201ENST00000450470 217 ntBASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RPL37P6-201ENST00000460682 294 ntBASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 MRPL42P6-201ENST00000486397 371 ntBASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 Y_RNA.689-201ENST00000516589 107 ntBASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 SCARNA24.2-201ENST00000516968 130 ntBASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 ERHP1-201ENST00000523006 310 ntBASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 MTND6P33-201ENST00000571794 183 ntBASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 MIR4643-201ENST00000577473 78 ntBASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 MIR4300-201ENST00000581016 96 ntBASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNU6-85P-201ENST00000605989 107 ntBASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AL365361.1-201ENST00000566942 3481 ntBASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 Y_RNA.16-201ENST00000362421 102 ntBASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 Y_RNA.510-201ENST00000384511 114 ntBASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RNU11-4P-201ENST00000391149 133 ntBASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL591034.2-201ENST00000402839 359 ntBASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC073063.1-201ENST00000434352 607 ntBASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC006011.1-201ENST00000442758 349 ntBASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL031659.1-201ENST00000447075 539 ntBASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 PTMAP3-201ENST00000447474 330 ntBASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL365265.1-201ENST00000621045 234 ntBASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC110801.1-201ENST00000623590 212 ntBASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC243829.7-201ENST00000633081 225 ntBASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RNU6-701P-201ENST00000384059 107 ntBASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RNU6-708P-201ENST00000384217 107 ntBASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RNU6-417P-201ENST00000384712 107 ntBASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RNU6-1154P-201ENST00000391001 104 ntBASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 CYP4A43P-201ENST00000568156 121 ntBASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 MIR3144-201ENST00000579460 79 ntBASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 OR1M4P-201ENST00000589199 287 ntBASIC5.51□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC007619.2-201ENST00000605743 379 ntBASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 361.2 ms