Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 U3.26-201ENST00000391236 204 ntBASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC234781.4-201ENST00000419384 244 ntBASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC007098.1-201ENST00000420122 367 ntBASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RPS12P5-201ENST00000423449 371 ntBASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC008264.1-201ENST00000447612 367 ntBASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 PRDX3P3-201ENST00000447765 522 ntBASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC025554.1-201ENST00000505641 188 ntBASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RNU6-346P-201ENST00000516288 111 ntBASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC006064.5-201ENST00000541782 248 ntBASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC027228.2-201ENST00000567141 2154 ntBASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 LINC01109-201ENST00000603837 3081 ntBASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 HSP90AA5P-201ENST00000438353 2192 ntBASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 SRP72P2-201ENST00000344851 1979 ntBASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RNU1-14P-201ENST00000362759 152 ntBASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 SNORD115-46-201ENST00000390982 71 ntBASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AL139039.1-201ENST00000401900 692 ntBASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RNU6-735P-201ENST00000410612 107 ntBASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RPS23P10-201ENST00000416185 486 ntBASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 GEMIN8P3-201ENST00000445417 720 ntBASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC109925.1-201ENST00000478069 331 ntBASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RPS27AP13-201ENST00000498403 237 ntBASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 HMGB1P21-201ENST00000502313 581 ntBASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC008958.1-201ENST00000511047 682 ntBASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC073657.2-201ENST00000605661 303 ntBASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 MIR376A1-201ENST00000616574 68 ntBASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 SNHG22-203ENST00000617833 660 ntBASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC5.59□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 CDC27P2-201ENST00000425026 1922 ntBASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNU6-858P-201ENST00000362436 107 ntBASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNA5SP52-201ENST00000362448 134 ntBASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 SDHCP2-201ENST00000398565 501 ntBASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RPL21P65-201ENST00000406094 466 ntBASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 BX842559.1-201ENST00000419615 532 ntBASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC005912.1-201ENST00000495392 255 ntBASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AKIRIN2P1-201ENST00000505898 352 ntBASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC074198.2-201ENST00000508153 258 ntBASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNU6-479P-201ENST00000516348 105 ntBASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNU6-62P-201ENST00000516526 102 ntBASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AF186190.1-201ENST00000517470 480 ntBASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC104576.1-201ENST00000524225 88 ntBASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC022655.2-201ENST00000577280 318 ntBASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC072026.1-201ENST00000605023 201 ntBASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 MIR7154-201ENST00000620673 73 ntBASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.58□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC005183.1-201ENST00000603687 1979 ntBASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC092423.1-201ENST00000430165 186 ntBASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 FTLP19-201ENST00000433300 394 ntBASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AL049830.2-201ENST00000480072 201 ntBASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 SEPT14P8-201ENST00000508026 178 ntBASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 PPBPP1-201ENST00000510807 373 ntBASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 DEFB108D-201ENST00000527787 222 ntBASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 255.7 ms