Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RNU6-1226P-201ENST00000384317 107 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 MIR215-201ENST00000384858 110 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RNU6-516P-201ENST00000411381 104 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 EZH2P1-201ENST00000431167 291 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RPS17P13-201ENST00000448974 407 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RPL31P60-201ENST00000478450 367 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RPS29P19-201ENST00000479709 171 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC108022.1-201ENST00000493466 478 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RN7SL691P-201ENST00000494487 301 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC104164.2-201ENST00000496953 495 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 ACA59.1-201ENST00000515966 143 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC100870.1-201ENST00000522035 505 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 HSPE1P5-201ENST00000561489 272 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 MIR5685-201ENST00000579080 79 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 Z83818.1-201ENST00000603584 150 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AL355816.1-201ENST00000607951 118 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AL121772.2-201ENST00000614331 297 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 uc_338.13-201ENST00000618243 179 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AL589994.2-201ENST00000621124 579 ntBASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 TEX41-280ENST00000629185 591 ntTSL 5 BASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 Y_RNA.48-201ENST00000362710 103 ntBASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RNU6-1290P-201ENST00000362957 109 ntBASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RNU6-790P-201ENST00000384479 105 ntBASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RNU2-15P-201ENST00000410692 191 ntBASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC091286.1-201ENST00000431233 461 ntBASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RPL7P23-201ENST00000493874 747 ntBASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 COX7A2P2-201ENST00000505291 250 ntBASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 NDUFB4P9-201ENST00000511646 388 ntBASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RNU6-861P-201ENST00000516745 106 ntBASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC069113.1-201ENST00000517763 267 ntBASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 MRPS36P4-201ENST00000534436 298 ntBASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AL158032.1-201ENST00000605401 106 ntBASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 MIR1244-1-201ENST00000612829 85 ntBASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 MIR1244-3-201ENST00000635744 85 ntBASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 MIR1244-2-201ENST00000636449 85 ntBASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 MIR1244-4-202ENST00000636813 85 ntBASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AL359893.1-201ENST00000447628 1580 ntBASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AL161912.2-201ENST00000565707 3007 ntBASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC138393.1-203ENST00000327086 343 ntBASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 snoU2_19.2-201ENST00000363024 80 ntBASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 Y_RNA.304-201ENST00000365011 112 ntBASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 SMIM11P1-201ENST00000369586 178 ntBASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 Y_RNA.480-201ENST00000384364 102 ntBASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 SNORA69.1-201ENST00000390904 137 ntBASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 SNORA48.2-201ENST00000390926 124 ntBASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 MIR1289-1-201ENST00000408836 144 ntBASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 CEACAMP1-201ENST00000434624 1035 ntBASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC004866.2-201ENST00000438285 481 ntBASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AL513124.1-201ENST00000450410 614 ntBASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 Y_RNA.638-201ENST00000459374 113 ntBASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC135721.1-201ENST00000497954 479 ntBASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RNU7-200P-201ENST00000516105 62 ntBASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RNU6-1338P-201ENST00000516328 91 ntBASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 ZNF285B-201ENST00000561698 1767 ntBASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.6□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 222.2 ms