Protein–RNA interactions for Protein: Q9NXZ2

DDX43, Probable ATP-dependent RNA helicase DDX43, humanhuman

Known RBP Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX43Q9NXZ2 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 TXNP7-201ENST00000406296 293 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 AC138393.2-201ENST00000414742 246 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 Z85995.1-201ENST00000415547 335 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 UBE2FP1-201ENST00000416536 447 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 RPL31P35-201ENST00000431058 377 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 AC104850.1-201ENST00000435940 476 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 AP1S2P1-201ENST00000457344 379 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 AC117522.1-201ENST00000509821 380 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 RNU6-928P-201ENST00000516876 104 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 ADI1P3-201ENST00000549509 470 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 AL157687.1-201ENST00000554853 619 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 MIR3118-1-201ENST00000581787 76 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 LARP7P1-201ENST00000605576 316 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 AC093732.2-201ENST00000607950 274 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 AL355472.4-201ENST00000610233 626 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 AC069234.5-201ENST00000611056 416 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 AC010133.1-201ENST00000615809 842 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 AC012150.2-201ENST00000621300 544 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 LRRC77P-213ENST00000637727 880 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 MTND5P33-201ENST00000571250 1450 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 AC010680.1-201ENST00000590024 3590 ntBASIC3.2□□□□□ -1.9
DDX43Q9NXZ2 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 AC022336.2-201ENST00000568966 2538 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 Y_RNA.1-201ENST00000352915 104 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 RNU6-270P-201ENST00000364131 105 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 RNU6-534P-201ENST00000364877 106 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 Y_RNA.402-201ENST00000383972 102 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 Y_RNA.409-201ENST00000383990 98 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 AL109755.1-201ENST00000401791 649 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 RPL5P18-201ENST00000406671 891 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 BMS1P22-201ENST00000414726 313 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 AL353193.1-201ENST00000421444 268 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 RPL22P17-201ENST00000438729 315 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 AL049734.2-201ENST00000441066 616 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 UQCRHP3-201ENST00000451503 251 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 AC091179.1-201ENST00000461606 579 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 RPS15AP36-201ENST00000492022 382 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 AF038458.1-201ENST00000588406 262 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 AC245014.2-201ENST00000603689 287 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 AC246785.4-201ENST00000605374 287 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 BX664608.1-201ENST00000610519 487 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 SDR42E1P2-201ENST00000614861 481 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 AC007318.2-201ENST00000620999 243 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 SCARNA15.3-201ENST00000626315 122 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 SCARNA4.1-201ENST00000628597 123 ntBASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
DDX43Q9NXZ2 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 RNU5E-1-201ENST00000362477 120 ntBASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 Y_RNA.89-201ENST00000363031 102 ntBASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 RNU6-181P-201ENST00000363225 107 ntBASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 Y_RNA.453-201ENST00000384223 109 ntBASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 RNU6-198P-201ENST00000384258 104 ntBASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 RPL23AP32-201ENST00000395315 459 ntBASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 RN7SKP140-201ENST00000411196 284 ntBASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 AC133104.1-201ENST00000429100 218 ntBASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 Z82210.1-201ENST00000440037 231 ntBASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 MTCO3P45-201ENST00000443036 613 ntBASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 DPPA3P1-201ENST00000448050 469 ntBASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 AC092798.1-201ENST00000458542 409 ntBASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
DDX43Q9NXZ2 AC114781.4-201ENST00000513707 639 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 200 ms