Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ZNF971P-201ENST00000562068 1249 ntBASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 AC023825.1-201ENST00000566704 1030 ntBASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 AC010928.2-201ENST00000588017 287 ntBASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 AC068620.3-201ENST00000602749 560 ntBASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 AL133507.1-201ENST00000605269 557 ntBASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 AC096772.1-201ENST00000609146 564 ntBASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 AL161734.1-201ENST00000609720 557 ntBASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 SNORA63.3-201ENST00000362682 132 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 AC016769.3-201ENST00000396562 315 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 AC092634.6-201ENST00000418558 192 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 MTCO2P5-201ENST00000422621 426 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 AC013262.1-201ENST00000426710 252 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 USP9YP22-201ENST00000438971 294 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 PTGES3P1-201ENST00000439531 483 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 PGBD4P3-201ENST00000440731 581 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 OFD1P3Y-201ENST00000453312 783 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 AC026414.1-201ENST00000504046 698 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 SUMO2P6-201ENST00000505273 288 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 AC023632.1-201ENST00000518463 375 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 AC010376.1-201ENST00000522101 334 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 AC087897.1-201ENST00000550134 156 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 NBEAP1-201ENST00000554452 979 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 AC097468.3-201ENST00000607956 456 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 AC025588.4-201ENST00000615802 908 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 uc_338.20-201ENST00000621563 178 ntBASIC1.84□□□□□ -2.11
SHANK3Q9BYB0 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC1.84□□□□□ -2.12
SHANK3Q9BYB0 MIR493-201ENST00000385254 89 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 U3.40-201ENST00000408706 208 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 RNU2-40P-201ENST00000410833 196 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC092047.1-201ENST00000424997 240 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 HMGN2P19-201ENST00000425149 265 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC092427.1-201ENST00000439177 601 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC079776.3-201ENST00000450665 370 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC004223.1-201ENST00000479840 271 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 HMGB3P3-201ENST00000510526 400 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 RNA5SP364-201ENST00000516938 78 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 RNU6-1028P-201ENST00000517164 93 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 NDUFS5P6-201ENST00000529136 295 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 DEFB130C-202ENST00000530001 230 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC122134.1-202ENST00000569111 1201 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC126365.2-201ENST00000580630 379 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC008507.2-201ENST00000588402 1176 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC106791.2-201ENST00000604680 391 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 MIR6130-201ENST00000619419 109 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC098657.3-201ENST00000620434 263 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 TPTE2P4-201ENST00000258589 1605 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC099654.7-201ENST00000635788 2127 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 ZNF519P1-201ENST00000449011 1626 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 RNU1-133P-201ENST00000364867 167 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 RNA5SP363-201ENST00000365072 115 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 MIR1304-201ENST00000408243 91 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC096533.1-201ENST00000411645 353 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 BTF3P8-201ENST00000414577 526 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 SEPT7P5-201ENST00000434048 306 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 RAC1P7-201ENST00000445367 377 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 MTND1P18-201ENST00000448191 573 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC026410.2-201ENST00000460281 156 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC093801.2-201ENST00000503966 1050 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 MTCYBP16-201ENST00000509187 1129 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 SNORA48.10-201ENST00000516965 160 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AP003066.2-201ENST00000529375 555 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC138915.2-201ENST00000569776 97 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC069304.2-201ENST00000605154 435 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 AC027309.3-201ENST00000623419 351 ntBASIC1.83□□□□□ -2.12
SHANK3Q9BYB0 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 RNU2-43P-201ENST00000410306 190 ntBASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 MTND4P3-201ENST00000417829 541 ntBASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 AC007435.1-201ENST00000421086 415 ntBASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 RAC1P8-201ENST00000427086 527 ntBASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 MTND2P20-201ENST00000440805 661 ntBASIC1.82□□□□□ -2.12
SHANK3Q9BYB0 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 258.9 ms