Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 NDUFB4P10-201ENST00000452541 359 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 SNORD121B-201ENST00000458838 81 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RPS29P26-201ENST00000477483 171 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC069499.1-201ENST00000489433 509 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC093767.1-201ENST00000504523 156 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC067942.3-201ENST00000512025 362 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC144568.1-201ENST00000520139 137 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 PSMA6P4-201ENST00000603247 718 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC140113.4-201ENST00000622087 222 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 PCNP-208ENST00000627393 136 ntTSL 2 BASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC130650.2-201ENST00000618736 2403 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 GABPAP-201ENST00000419271 1356 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC027287.1-201ENST00000553115 1453 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 Y_RNA.54-201ENST00000362766 105 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RNU6-704P-201ENST00000364162 103 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 MIR625-201ENST00000385047 85 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RPL21P38-201ENST00000418090 167 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 UBE2V1P4-201ENST00000425374 344 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 PSMA2P3-201ENST00000429685 675 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RPL12P18-201ENST00000437175 325 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RPS3AP46-201ENST00000448352 682 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AL500522.2-201ENST00000448562 343 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AL162151.2-201ENST00000448875 158 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC084198.1-201ENST00000477747 402 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RPS29P2-201ENST00000479278 136 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RBBP4P6-201ENST00000508098 202 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RNU2-69P-201ENST00000516061 100 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RNA5SP497-201ENST00000516081 97 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RNU6-798P-201ENST00000516912 103 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RNU6-64P-201ENST00000517119 105 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RN7SL703P-201ENST00000578485 302 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC008162.1-201ENST00000604718 254 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AL451044.1-201ENST00000604867 238 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AL670379.4-201ENST00000605279 254 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 HSP90AA4P-202ENST00000506915 2228 ntBASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 PROS2P-201ENST00000474651 1951 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 XIAPP3-201ENST00000312918 795 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 Y_RNA.84-201ENST00000363011 104 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 Y_RNA.237-201ENST00000364439 102 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RNA5SP366-201ENST00000365454 123 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 Y_RNA.471-201ENST00000384312 102 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 MIR517A-201ENST00000385001 87 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AL603910.2-201ENST00000407268 136 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RPL23AP25-201ENST00000430973 463 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AL353997.1-201ENST00000432936 108 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC011998.1-201ENST00000433403 117 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RPL35AP22-201ENST00000436855 335 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AL136097.1-201ENST00000456945 913 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC053481.1-201ENST00000467217 306 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC087385.1-201ENST00000475062 312 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RN7SL810P-201ENST00000493031 276 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC005726.1-201ENST00000494679 427 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC025423.5-201ENST00000550230 219 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RPL7P50-201ENST00000600588 727 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC002044.1-201ENST00000606707 158 ntBASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 UBE2D3P2-201ENST00000424409 445 ntBASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RPL12P46-201ENST00000436610 195 ntBASIC5.74□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 159.3 ms