Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.71
EPHB3P54753 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
EPHB3P54753 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
EPHB3P54753 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
EPHB3P54753 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
EPHB3P54753 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.4□□□□□ -1.71
EPHB3P54753 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
EPHB3P54753 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.39□□□□□ -1.71
EPHB3P54753 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
EPHB3P54753 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
EPHB3P54753 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
EPHB3P54753 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
EPHB3P54753 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
EPHB3P54753 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.39□□□□□ -1.71
EPHB3P54753 AL157777.2-201ENST00000258070 137 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
EPHB3P54753 Y_RNA.14-201ENST00000362415 103 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 RNU6-715P-201ENST00000365204 103 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 SNORD14.1-201ENST00000365609 90 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 MIR1302-6-201ENST00000408466 90 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 AC096664.2-201ENST00000411843 406 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.39□□□□□ -1.71
EPHB3P54753 AL590664.1-201ENST00000448065 339 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 RN7SL132P-201ENST00000478131 296 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 RN7SL817P-201ENST00000480777 288 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 AP001086.1-201ENST00000494882 321 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 SNORA40.14-201ENST00000516543 86 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 IL7-206ENST00000520269 456 ntTSL 3 BASIC4.39□□□□□ -1.71
EPHB3P54753 DEFB108D-201ENST00000527787 222 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.39□□□□□ -1.71
EPHB3P54753 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.39□□□□□ -1.71
EPHB3P54753 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC4.39□□□□□ -1.71
EPHB3P54753 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC4.39□□□□□ -1.71
EPHB3P54753 RPL23AP84-201ENST00000571193 464 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 AL359547.2-201ENST00000615810 418 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 AL138721.1-201ENST00000616756 179 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 AC140113.4-201ENST00000622087 222 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 MIR4272-201ENST00000635924 64 ntBASIC4.39□□□□□ -1.71
EPHB3P54753 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.39□□□□□ -1.71
EPHB3P54753 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
EPHB3P54753 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
EPHB3P54753 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.39□□□□□ -1.71
EPHB3P54753 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
EPHB3P54753 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.39□□□□□ -1.71
EPHB3P54753 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC4.39□□□□□ -1.71
EPHB3P54753 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.39□□□□□ -1.71
EPHB3P54753 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
EPHB3P54753 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.39□□□□□ -1.71
EPHB3P54753 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.38□□□□□ -1.71
EPHB3P54753 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
EPHB3P54753 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
EPHB3P54753 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
EPHB3P54753 RNU6-1059P-201ENST00000363752 98 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
EPHB3P54753 RNU6-842P-201ENST00000384269 107 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 Y_RNA.483-201ENST00000384380 101 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 SNORD96B-201ENST00000386148 79 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 RN7SKP159-201ENST00000410657 292 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 RNU2-38P-201ENST00000410856 79 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 RPL31P2-201ENST00000413849 377 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 AC008065.1-201ENST00000428525 348 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 AL645568.3-201ENST00000433683 316 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 RPL23AP50-201ENST00000434149 455 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC4.38□□□□□ -1.71
EPHB3P54753 AC073587.1-201ENST00000447093 876 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC4.38□□□□□ -1.71
EPHB3P54753 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.38□□□□□ -1.71
EPHB3P54753 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.38□□□□□ -1.71
EPHB3P54753 AC093852.1-201ENST00000503587 266 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
EPHB3P54753 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.38□□□□□ -1.71
EPHB3P54753 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.38□□□□□ -1.71
EPHB3P54753 AC016065.2-201ENST00000514530 444 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 AF186190.1-201ENST00000517470 480 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.38□□□□□ -1.71
EPHB3P54753 AL137100.2-201ENST00000555786 315 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.38□□□□□ -1.71
EPHB3P54753 AC053481.4-201ENST00000583164 216 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 AC025588.3-201ENST00000604182 274 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 AL670379.4-201ENST00000605279 254 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 HMGN2P28-201ENST00000606102 262 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
EPHB3P54753 AC103858.2-201ENST00000621471 543 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 AC005086.4-201ENST00000623065 213 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 BMS1P21-201ENST00000634565 365 ntBASIC4.38□□□□□ -1.71
EPHB3P54753 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
EPHB3P54753 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
EPHB3P54753 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.38□□□□□ -1.71
EPHB3P54753 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
EPHB3P54753 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
EPHB3P54753 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
EPHB3P54753 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
EPHB3P54753 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
EPHB3P54753 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
EPHB3P54753 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.37□□□□□ -1.71
EPHB3P54753 Y_RNA.222-201ENST00000364264 102 ntBASIC4.37□□□□□ -1.71
EPHB3P54753 SNORA20.1-201ENST00000364790 130 ntBASIC4.37□□□□□ -1.71
EPHB3P54753 SNORD51-201ENST00000384320 80 ntBASIC4.37□□□□□ -1.71
EPHB3P54753 SNORA48.7-201ENST00000391302 135 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 269 ms