Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RNU1-44P-201ENST00000384453 163 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 SNORA16.2-201ENST00000390991 127 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 PTMAP5-201ENST00000393073 333 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 MIR921-201ENST00000401133 56 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL356387.2-201ENST00000422272 243 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RPL23AP38-201ENST00000423801 469 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC096920.1-201ENST00000423991 241 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RPL36AP13-201ENST00000457490 317 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 Y_RNA.644-201ENST00000459006 113 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AP001486.1-201ENST00000463339 476 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC087884.1-201ENST00000469738 328 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 Y_RNA.674-201ENST00000516362 113 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 FTH1P11-201ENST00000517577 551 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL121576.1-201ENST00000556055 276 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC010900.2-201ENST00000604508 210 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 BX284668.6-201ENST00000606899 438 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC023813.4-201ENST00000607580 580 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 Y_RNA.122-201ENST00000363331 96 ntBASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 MIR613-201ENST00000385248 95 ntBASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 MRPL35P1-201ENST00000404272 572 ntBASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 HDGFP1-201ENST00000405943 252 ntBASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL139156.1-201ENST00000412785 841 ntBASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC022022.1-201ENST00000430304 178 ntBASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 VN1R105P-201ENST00000486595 910 ntBASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RPS29P30-201ENST00000600975 111 ntBASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL355877.2-201ENST00000603670 358 ntBASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 MZT1P2-201ENST00000604387 248 ntBASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC064801.1-201ENST00000612025 407 ntBASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AP001282.2-201ENST00000616149 309 ntBASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL136313.1-201ENST00000624804 202 ntBASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 FAM91A3P-201ENST00000456826 2544 ntBASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC087190.4-201ENST00000574616 8334 ntBASIC5.79□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL391987.6-201ENST00000305671 199 ntBASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNU6-611P-201ENST00000384276 104 ntBASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNU6-1203P-201ENST00000410703 110 ntBASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 EIF4A1P3-201ENST00000411521 244 ntBASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL031274.1-201ENST00000450334 232 ntBASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RPL23AP31-201ENST00000456160 467 ntBASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNU7-120P-201ENST00000459334 63 ntBASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 LEF1-218ENST00000512172 598 ntTSL 2 BASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC109329.1-201ENST00000518744 317 ntBASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL133153.1-201ENST00000557756 303 ntBASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC053481.4-201ENST00000583164 216 ntBASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC008521.1-201ENST00000587471 187 ntBASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 SNORD91B-202ENST00000608459 222 ntBASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL359547.2-201ENST00000615810 418 ntBASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 EXOC5P1-201ENST00000510543 1969 ntBASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 Y_RNA.83-201ENST00000363005 113 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 Y_RNA.183-201ENST00000363882 113 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 SNORA23-201ENST00000365128 182 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 MIR1298-201ENST00000408783 112 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 DPPA2P2-201ENST00000418220 897 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 AL158071.1-201ENST00000430315 461 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 RPL36P19-201ENST00000430744 301 ntBASIC5.77□□□□□ -1.49
SENP3-EIF4A1A0A087X0R7 OR2AQ1P-201ENST00000451972 200 ntBASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 159.9 ms