Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 SSXP4-201ENST00000451349 245 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 HMGN2P16-201ENST00000456802 261 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 AC090515.1-201ENST00000465295 476 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 AC078857.1-201ENST00000469870 667 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 AC006518.2-201ENST00000542513 940 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 LSM6P2-201ENST00000552208 177 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 MIR6788-201ENST00000618842 66 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 RNU6-821P-201ENST00000390995 107 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 OFD1P12Y-201ENST00000427963 1207 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 OFD1P13Y-201ENST00000431179 1232 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 SNRPEP4-201ENST00000435815 279 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 BNIP3P2-201ENST00000441221 577 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 RPL17P49-201ENST00000443728 411 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 CCNB1IP1P3-201ENST00000454702 829 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 AC090255.1-201ENST00000495779 349 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 HMGB1P22-201ENST00000505315 124 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 AC010625.1-201ENST00000511296 403 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 AC007115.1-201ENST00000546853 234 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 NIFKP8-201ENST00000560500 874 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 AC010738.1-201ENST00000604970 987 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 AC097372.4-201ENST00000625025 466 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 AL133216.2-202ENST00000634512 349 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 MTND4P1-201ENST00000457501 1466 ntBASIC2.08□□□□□ -2.08
SHANK3Q9BYB0 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 RNU6-263P-201ENST00000363811 107 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 RNU6-173P-201ENST00000364215 104 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 RNU6-60P-201ENST00000364792 103 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 RNU6-609P-201ENST00000365459 107 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 RNU6-549P-201ENST00000384433 107 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 RNU6-882P-201ENST00000391025 103 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 PTGES3P2-201ENST00000407942 482 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 AC109780.2-201ENST00000413467 845 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 AC234064.1-201ENST00000436312 247 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 AL031659.1-201ENST00000447075 539 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 TPT1P14-201ENST00000448018 505 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 RPL32P14-201ENST00000463196 378 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 BOLA3P3-201ENST00000505182 232 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 AL669831.4-202ENST00000590817 238 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 AC133794.1-201ENST00000602731 914 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 GAS5-AS1-201ENST00000602767 694 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 AP003973.1-201ENST00000604639 691 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 AC013468.1-201ENST00000608680 598 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 AC090116.1-201ENST00000615679 446 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 MIR6767-201ENST00000637302 66 ntBASIC2.07□□□□□ -2.08
SHANK3Q9BYB0 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 RNU6-921P-201ENST00000384361 107 ntBASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 AC005345.1-201ENST00000431868 217 ntBASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 AL512661.1-201ENST00000434586 1253 ntBASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 MTND3P24-201ENST00000506306 329 ntBASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 EEF1B2P4-201ENST00000551398 348 ntBASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 MTCYBP27-201ENST00000555160 670 ntBASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 MIR5694-201ENST00000581190 76 ntBASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 AC055876.5-201ENST00000605667 259 ntBASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 MIR8084-201ENST00000614105 89 ntBASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 AL138880.2-201ENST00000616214 239 ntBASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 AC093875.1-201ENST00000623688 504 ntBASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.06□□□□□ -2.08
SHANK3Q9BYB0 RNU6-792P-201ENST00000363490 107 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 RNU1-42P-201ENST00000364033 160 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 FO393413.1-201ENST00000402892 195 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 170.7 ms