Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNU6-28P-201ENST00000362378 107 ntBASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL359643.1-201ENST00000404109 423 ntBASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC133473.1-201ENST00000455173 299 ntBASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RPL23AP2-201ENST00000471227 466 ntBASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 HIGD1AP13-201ENST00000509878 289 ntBASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNU1-6P-201ENST00000516290 144 ntBASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 Y_RNA.673-201ENST00000516306 88 ntBASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNU7-51P-201ENST00000516560 62 ntBASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 Y_RNA.715-201ENST00000517082 110 ntBASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC022080.3-201ENST00000544433 482 ntBASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 HMGB3P26-201ENST00000560051 582 ntBASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 HNRNPCP4-201ENST00000571636 900 ntBASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL160290.3-201ENST00000604869 165 ntBASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 MTND4LP5-201ENST00000605152 292 ntBASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 SNORD58B-201ENST00000607313 66 ntBASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC133552.1-201ENST00000569988 4007 ntBASIC6.09□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 Y_RNA.29-201ENST00000362570 113 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 RNU6-179P-201ENST00000363350 107 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 Y_RNA.150-201ENST00000363562 102 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 RNU5A-8P-201ENST00000364102 114 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 SNORD113-1-201ENST00000365321 69 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 ARF4P3-201ENST00000397387 509 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AL078604.1-201ENST00000404609 466 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 RNA5SP317-201ENST00000410176 116 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 RN7SKP159-201ENST00000410657 292 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 RNA5SP311-201ENST00000411290 116 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 USMG5P1-201ENST00000425964 177 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC007389.2-201ENST00000434630 306 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC108734.1-201ENST00000439549 399 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 LAMTOR5P1-201ENST00000444290 270 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC007967.1-201ENST00000455422 1159 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AP000893.1-201ENST00000474462 794 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 FTH1P21-201ENST00000512179 511 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 RNA5SP315-201ENST00000516340 116 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 RNU1-103P-201ENST00000516502 125 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 RNA5SP312-201ENST00000517068 116 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 HSPE1P20-201ENST00000538133 289 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 HMGB2P1-201ENST00000591146 634 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC008687.2-201ENST00000597865 520 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AL031176.1-201ENST00000604554 466 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC012314.7-201ENST00000619693 93 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AL445363.3-201ENST00000623080 671 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 CR381572.2-201ENST00000624852 397 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 U3.53-201ENST00000628922 216 ntBASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC6.08□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC245100.2-201ENST00000454544 1679 ntBASIC6.07□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC6.07□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC6.07□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AC011460.1-201ENST00000636268 1834 ntBASIC6.07□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 SNORD14.1-201ENST00000365609 90 ntBASIC6.07□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 Y_RNA.376-201ENST00000365638 108 ntBASIC6.07□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 RNU6-187P-201ENST00000384139 106 ntBASIC6.07□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 U3.20-201ENST00000390909 217 ntBASIC6.07□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 AP000580.1-201ENST00000404439 358 ntBASIC6.07□□□□□ -1.44
SENP3-EIF4A1A0A087X0R7 PPIAP31-201ENST00000405422 495 ntBASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 160.6 ms