Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC104229.1-201ENST00000561364 255 ntBASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 AC103987.3-201ENST00000582071 292 ntBASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 AL450270.1-201ENST00000606160 391 ntBASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 VN1R74P-201ENST00000613259 503 ntBASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 RNU6-156P-201ENST00000621869 107 ntBASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 AL590396.2-201ENST00000636511 1041 ntBASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 AP000553.5-201ENST00000641933 54 ntBASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 RNU4-13P-201ENST00000364019 141 ntBASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 SNORA7.2-201ENST00000364446 145 ntBASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 AC096632.1-201ENST00000427395 310 ntBASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 LAMTOR3P1-201ENST00000428620 370 ntBASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 CKS1BP5-201ENST00000434172 273 ntBASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 HESX1-202ENST00000473921 757 ntTSL 5 BASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 RNU6-488P-201ENST00000515918 99 ntBASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 AC021851.1-201ENST00000608537 1082 ntBASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 OR10AB1P-201ENST00000609613 938 ntBASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 AC006023.2-201ENST00000609916 167 ntBASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 AC020658.4-201ENST00000613987 684 ntBASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 AL163051.2-201ENST00000618976 735 ntBASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 AC092608.3-201ENST00000625017 386 ntBASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
SHANK3Q9BYB0 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 RNU6-543P-201ENST00000362576 108 ntBASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 AP000567.1-201ENST00000406413 156 ntBASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 TPMTP3-201ENST00000411928 735 ntBASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 YWHAZP8-201ENST00000436935 731 ntBASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 AC092170.1-201ENST00000440211 356 ntBASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 SSXP1-201ENST00000453640 473 ntBASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 HSPE1P20-201ENST00000538133 289 ntBASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 AC008687.2-201ENST00000597865 520 ntBASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 AC096586.1-201ENST00000610267 561 ntBASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
SHANK3Q9BYB0 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 RNA5SP138-201ENST00000365098 114 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AL121972.1-201ENST00000402023 252 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 UBE2V1P15-201ENST00000407776 448 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 UBE2V1P9-201ENST00000414760 368 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 MTCYBP24-201ENST00000420387 1106 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 HMGN2P20-201ENST00000437531 273 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AC244505.5-201ENST00000443639 207 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 MTND1P33-201ENST00000446251 917 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 Z99714.1-201ENST00000450463 807 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 MTCYBP17-201ENST00000503579 789 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 OR8K4P-201ENST00000534608 872 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 PRELID2P1-201ENST00000552837 301 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AC008015.1-201ENST00000555505 465 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AC136443.5-201ENST00000603741 370 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AL645939.4-201ENST00000604495 135 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 CKAP2P1-201ENST00000555477 2049 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 RNU6-1243P-201ENST00000364028 107 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 POLHP1-201ENST00000411806 470 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AMD1P1-201ENST00000457220 922 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 RPL21P104-201ENST00000464143 478 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 SYPL1P1-201ENST00000473622 768 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 RPL21P47-201ENST00000483696 477 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 MTCO2P32-201ENST00000514865 403 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 IGKV2D-36-201ENST00000518643 226 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AP002748.2-201ENST00000528671 348 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 MIR4474-201ENST00000579189 78 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 MIR4285-201ENST00000581001 85 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 OR4G1P-201ENST00000588632 938 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AC079791.1-201ENST00000605356 973 ntBASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC2.25□□□□□ -2.05
SHANK3Q9BYB0 AC005336.3-201ENST00000623833 2679 ntBASIC2.24□□□□□ -2.05
SHANK3Q9BYB0 AC012321.1-201ENST00000561622 1588 ntBASIC2.24□□□□□ -2.05
SHANK3Q9BYB0 MTND5P31-201ENST00000419366 1374 ntBASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 183.8 ms