Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Vps28Q9D1C8 AC153890.1-201ENSMUST00000220021 2469 ntBASIC23.78■■□□□ 1.4
Vps28Q9D1C8 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Vps28Q9D1C8 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
Vps28Q9D1C8 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Vps28Q9D1C8 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Vps28Q9D1C8 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Vps28Q9D1C8 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
Vps28Q9D1C8 Gm37136-201ENSMUST00000194368 194 ntBASIC23.77■■□□□ 1.4
Vps28Q9D1C8 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Vps28Q9D1C8 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Vps28Q9D1C8 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
Vps28Q9D1C8 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Vps28Q9D1C8 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Vps28Q9D1C8 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Vps28Q9D1C8 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC23.76■■□□□ 1.39
Vps28Q9D1C8 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Vps28Q9D1C8 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Vps28Q9D1C8 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC23.75■■□□□ 1.39
Vps28Q9D1C8 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Vps28Q9D1C8 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Vps28Q9D1C8 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Vps28Q9D1C8 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Vps28Q9D1C8 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Vps28Q9D1C8 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Vps28Q9D1C8 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Vps28Q9D1C8 AC167019.3-201ENSMUST00000228225 1266 ntBASIC23.72■■□□□ 1.39
Vps28Q9D1C8 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Vps28Q9D1C8 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Vps28Q9D1C8 Gm37847-201ENSMUST00000192163 1497 ntBASIC23.7■■□□□ 1.38
Vps28Q9D1C8 Gm31748-201ENSMUST00000194938 1497 ntBASIC23.7■■□□□ 1.38
Vps28Q9D1C8 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
Vps28Q9D1C8 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
Vps28Q9D1C8 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC23.69■■□□□ 1.38
Vps28Q9D1C8 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC23.69■■□□□ 1.38
Vps28Q9D1C8 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Vps28Q9D1C8 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Vps28Q9D1C8 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Vps28Q9D1C8 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Vps28Q9D1C8 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC23.67■■□□□ 1.38
Vps28Q9D1C8 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC23.67■■□□□ 1.38
Vps28Q9D1C8 Gm6311-201ENSMUST00000073790 878 ntBASIC23.67■■□□□ 1.38
Vps28Q9D1C8 Gm4799-201ENSMUST00000095396 657 ntBASIC23.67■■□□□ 1.38
Vps28Q9D1C8 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Vps28Q9D1C8 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC23.66■■□□□ 1.38
Vps28Q9D1C8 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Vps28Q9D1C8 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Vps28Q9D1C8 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
Vps28Q9D1C8 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Vps28Q9D1C8 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Vps28Q9D1C8 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
Vps28Q9D1C8 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
Vps28Q9D1C8 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Vps28Q9D1C8 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC23.64■■□□□ 1.37
Vps28Q9D1C8 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Vps28Q9D1C8 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Vps28Q9D1C8 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Vps28Q9D1C8 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Vps28Q9D1C8 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Vps28Q9D1C8 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
Vps28Q9D1C8 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Vps28Q9D1C8 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Vps28Q9D1C8 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Vps28Q9D1C8 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
Vps28Q9D1C8 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
Vps28Q9D1C8 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
Vps28Q9D1C8 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Vps28Q9D1C8 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC23.59■■□□□ 1.37
Vps28Q9D1C8 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC23.59■■□□□ 1.37
Vps28Q9D1C8 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
Vps28Q9D1C8 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
Vps28Q9D1C8 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC23.58■■□□□ 1.37
Vps28Q9D1C8 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
Vps28Q9D1C8 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC23.58■■□□□ 1.37
Vps28Q9D1C8 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
Vps28Q9D1C8 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC23.58■■□□□ 1.37
Vps28Q9D1C8 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Vps28Q9D1C8 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Vps28Q9D1C8 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
Vps28Q9D1C8 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Vps28Q9D1C8 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Vps28Q9D1C8 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Vps28Q9D1C8 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Vps28Q9D1C8 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Vps28Q9D1C8 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Vps28Q9D1C8 Mir3960-201ENSMUST00000198213 73 ntBASIC23.55■■□□□ 1.36
Vps28Q9D1C8 AC154454.1-201ENSMUST00000225253 216 ntBASIC23.55■■□□□ 1.36
Vps28Q9D1C8 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
Vps28Q9D1C8 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Vps28Q9D1C8 Gm14121-201ENSMUST00000121441 1380 ntBASIC23.53■■□□□ 1.36
Vps28Q9D1C8 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Vps28Q9D1C8 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC23.53■■□□□ 1.36
Vps28Q9D1C8 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Vps28Q9D1C8 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Vps28Q9D1C8 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Vps28Q9D1C8 Gm13889-201ENSMUST00000099689 1386 ntBASIC23.52■■□□□ 1.36
Vps28Q9D1C8 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Vps28Q9D1C8 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC23.52■■□□□ 1.36
Vps28Q9D1C8 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Vps28Q9D1C8 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Retrieved 100 of 76,532 protein–RNA pairs in 138.6 ms