Protein–RNA interactions for Protein: A0A0B4J1H3

Trbv16, T cell receptor beta, variable 16 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv16A0A0B4J1H3 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trbv16A0A0B4J1H3 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trbv16A0A0B4J1H3 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trbv16A0A0B4J1H3 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC16.83■□□□□ 0.28
Trbv16A0A0B4J1H3 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trbv16A0A0B4J1H3 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trbv16A0A0B4J1H3 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trbv16A0A0B4J1H3 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trbv16A0A0B4J1H3 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trbv16A0A0B4J1H3 Il17rd-202ENSMUST00000223942 2186 ntBASIC16.82■□□□□ 0.28
Trbv16A0A0B4J1H3 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trbv16A0A0B4J1H3 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC16.81■□□□□ 0.28
Trbv16A0A0B4J1H3 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trbv16A0A0B4J1H3 Tdp2-203ENSMUST00000223804 1136 ntBASIC16.8■□□□□ 0.28
Trbv16A0A0B4J1H3 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trbv16A0A0B4J1H3 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trbv16A0A0B4J1H3 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trbv16A0A0B4J1H3 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trbv16A0A0B4J1H3 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trbv16A0A0B4J1H3 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trbv16A0A0B4J1H3 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Trbv16A0A0B4J1H3 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trbv16A0A0B4J1H3 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trbv16A0A0B4J1H3 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trbv16A0A0B4J1H3 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trbv16A0A0B4J1H3 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Trbv16A0A0B4J1H3 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Trbv16A0A0B4J1H3 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trbv16A0A0B4J1H3 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trbv16A0A0B4J1H3 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trbv16A0A0B4J1H3 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
Trbv16A0A0B4J1H3 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Trbv16A0A0B4J1H3 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trbv16A0A0B4J1H3 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trbv16A0A0B4J1H3 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Trbv16A0A0B4J1H3 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Trbv16A0A0B4J1H3 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trbv16A0A0B4J1H3 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trbv16A0A0B4J1H3 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Trbv16A0A0B4J1H3 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Trbv16A0A0B4J1H3 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trbv16A0A0B4J1H3 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trbv16A0A0B4J1H3 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trbv16A0A0B4J1H3 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trbv16A0A0B4J1H3 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trbv16A0A0B4J1H3 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trbv16A0A0B4J1H3 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC16.73■□□□□ 0.27
Trbv16A0A0B4J1H3 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trbv16A0A0B4J1H3 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trbv16A0A0B4J1H3 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trbv16A0A0B4J1H3 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trbv16A0A0B4J1H3 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Trbv16A0A0B4J1H3 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trbv16A0A0B4J1H3 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trbv16A0A0B4J1H3 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Trbv16A0A0B4J1H3 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Trbv16A0A0B4J1H3 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trbv16A0A0B4J1H3 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trbv16A0A0B4J1H3 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trbv16A0A0B4J1H3 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC16.7■□□□□ 0.26
Trbv16A0A0B4J1H3 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Trbv16A0A0B4J1H3 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trbv16A0A0B4J1H3 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trbv16A0A0B4J1H3 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trbv16A0A0B4J1H3 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trbv16A0A0B4J1H3 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trbv16A0A0B4J1H3 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trbv16A0A0B4J1H3 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC16.68■□□□□ 0.26
Trbv16A0A0B4J1H3 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trbv16A0A0B4J1H3 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trbv16A0A0B4J1H3 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Trbv16A0A0B4J1H3 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trbv16A0A0B4J1H3 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trbv16A0A0B4J1H3 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
Trbv16A0A0B4J1H3 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trbv16A0A0B4J1H3 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC16.66■□□□□ 0.26
Trbv16A0A0B4J1H3 Gm45855-201ENSMUST00000212546 880 ntBASIC16.66■□□□□ 0.26
Trbv16A0A0B4J1H3 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trbv16A0A0B4J1H3 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Trbv16A0A0B4J1H3 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trbv16A0A0B4J1H3 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trbv16A0A0B4J1H3 Gm42699-201ENSMUST00000198104 1657 ntBASIC16.65■□□□□ 0.26
Trbv16A0A0B4J1H3 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trbv16A0A0B4J1H3 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trbv16A0A0B4J1H3 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC16.64■□□□□ 0.25
Trbv16A0A0B4J1H3 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trbv16A0A0B4J1H3 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trbv16A0A0B4J1H3 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trbv16A0A0B4J1H3 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trbv16A0A0B4J1H3 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trbv16A0A0B4J1H3 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Trbv16A0A0B4J1H3 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trbv16A0A0B4J1H3 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trbv16A0A0B4J1H3 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trbv16A0A0B4J1H3 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trbv16A0A0B4J1H3 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Trbv16A0A0B4J1H3 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC16.62■□□□□ 0.25
Trbv16A0A0B4J1H3 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trbv16A0A0B4J1H3 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trbv16A0A0B4J1H3 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms