Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
SHANK3Q9BYB0 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SHANK3Q9BYB0 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SHANK3Q9BYB0 MIR764-201ENST00000390811 85 ntBASIC4.06□□□□□ -1.76
SHANK3Q9BYB0 HMGB3P18-201ENST00000406327 590 ntBASIC4.06□□□□□ -1.76
SHANK3Q9BYB0 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC4.06□□□□□ -1.76
SHANK3Q9BYB0 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
SHANK3Q9BYB0 AC112653.1-201ENST00000443851 386 ntBASIC4.06□□□□□ -1.76
SHANK3Q9BYB0 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC4.06□□□□□ -1.76
SHANK3Q9BYB0 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC4.06□□□□□ -1.76
SHANK3Q9BYB0 PRELID3BP8-201ENST00000604148 295 ntBASIC4.06□□□□□ -1.76
SHANK3Q9BYB0 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SHANK3Q9BYB0 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
SHANK3Q9BYB0 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
SHANK3Q9BYB0 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SHANK3Q9BYB0 MIR30E-201ENST00000362104 92 ntBASIC4.05□□□□□ -1.76
SHANK3Q9BYB0 RNU6ATAC15P-201ENST00000408279 121 ntBASIC4.05□□□□□ -1.76
SHANK3Q9BYB0 RN7SKP220-201ENST00000410611 288 ntBASIC4.05□□□□□ -1.76
SHANK3Q9BYB0 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC4.05□□□□□ -1.76
SHANK3Q9BYB0 AC093156.1-201ENST00000440382 670 ntBASIC4.05□□□□□ -1.76
SHANK3Q9BYB0 AC069540.1-201ENST00000446320 988 ntBASIC4.05□□□□□ -1.76
SHANK3Q9BYB0 AC133473.1-201ENST00000455173 299 ntBASIC4.05□□□□□ -1.76
SHANK3Q9BYB0 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.05□□□□□ -1.76
SHANK3Q9BYB0 AC009948.4-201ENST00000604692 675 ntBASIC4.05□□□□□ -1.76
SHANK3Q9BYB0 AL592295.2-201ENST00000612578 206 ntBASIC4.05□□□□□ -1.76
SHANK3Q9BYB0 AL590808.1-201ENST00000618696 141 ntBASIC4.05□□□□□ -1.76
SHANK3Q9BYB0 MIR622-201ENST00000638396 96 ntBASIC4.05□□□□□ -1.76
SHANK3Q9BYB0 AC022031.1-201ENST00000585985 2593 ntBASIC4.05□□□□□ -1.76
SHANK3Q9BYB0 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 HSPA8P4-201ENST00000511877 1920 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 AC090971.4-201ENST00000560291 1800 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 AP002088.1-201ENST00000382740 395 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 AC016696.1-201ENST00000446949 318 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 MTND2P25-201ENST00000449028 610 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 AC015871.2-201ENST00000603605 948 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 AC012078.1-201ENST00000405035 1646 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 MIR448-201ENST00000362131 111 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 AL592148.1-201ENST00000413568 445 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 AL513174.1-201ENST00000423182 629 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 MRPS31P2-201ENST00000451581 518 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 HMGN2P7-201ENST00000456186 273 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 snoU13.23-201ENST00000458863 104 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 AC010307.1-201ENST00000467206 836 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 AC114781.4-201ENST00000513707 639 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 AC009812.2-201ENST00000517657 457 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 MIR4738-201ENST00000579134 87 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 OR1AB1P-201ENST00000585564 761 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 RMST_9.1-201ENST00000619945 193 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 AC103858.2-201ENST00000621471 543 ntBASIC4.04□□□□□ -1.76
SHANK3Q9BYB0 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 OR5BR1P-201ENST00000524992 1330 ntBASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 AC004552.1-201ENST00000419089 348 ntBASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 AL121877.1-201ENST00000453704 622 ntBASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 HMGB1P3-201ENST00000502802 616 ntBASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 AC034159.1-201ENST00000513885 583 ntBASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 SARNP-203ENST00000552080 726 ntTSL 2 BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SHANK3Q9BYB0 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
SHANK3Q9BYB0 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.02□□□□□ -1.77
SHANK3Q9BYB0 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
SHANK3Q9BYB0 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
SHANK3Q9BYB0 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
SHANK3Q9BYB0 RNA5SP508-201ENST00000411327 119 ntBASIC4.02□□□□□ -1.77
SHANK3Q9BYB0 AC005189.1-201ENST00000431286 310 ntBASIC4.02□□□□□ -1.77
SHANK3Q9BYB0 IFNA11P-201ENST00000446352 526 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 346 ms