Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC245100.7-201ENST00000609678 442 ntBASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SHANK3Q9BYB0 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
SHANK3Q9BYB0 ATP5F1P6-201ENST00000402768 767 ntBASIC4.09□□□□□ -1.75
SHANK3Q9BYB0 RAP1BP1-201ENST00000412709 553 ntBASIC4.09□□□□□ -1.75
SHANK3Q9BYB0 MYL8P-204ENST00000431574 518 ntBASIC4.09□□□□□ -1.75
SHANK3Q9BYB0 HSD52-202ENST00000436225 772 ntTSL 3 BASIC4.09□□□□□ -1.75
SHANK3Q9BYB0 AC104058.1-201ENST00000448028 297 ntBASIC4.09□□□□□ -1.75
SHANK3Q9BYB0 AC128713.1-201ENST00000471495 306 ntBASIC4.09□□□□□ -1.75
SHANK3Q9BYB0 AC107934.2-201ENST00000518653 310 ntBASIC4.09□□□□□ -1.75
SHANK3Q9BYB0 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC4.09□□□□□ -1.75
SHANK3Q9BYB0 MTCO1P22-201ENST00000604619 1360 ntBASIC4.09□□□□□ -1.75
SHANK3Q9BYB0 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
SHANK3Q9BYB0 SNORA71.1-201ENST00000364523 117 ntBASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 RN7SKP247-201ENST00000411094 308 ntBASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 RPS6P2-201ENST00000454208 705 ntBASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 AC021205.2-201ENST00000480069 347 ntBASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 RPL7P47-201ENST00000497299 556 ntBASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 RNU1-143P-201ENST00000516296 146 ntBASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 RN7SKP116-201ENST00000516902 319 ntBASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 AC098826.3-201ENST00000603823 466 ntBASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 U1.23-201ENST00000610293 146 ntBASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 RNU1-68P-201ENST00000615382 146 ntBASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 U1.39-201ENST00000621562 146 ntBASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.09□□□□□ -1.76
SHANK3Q9BYB0 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 AL445213.1-201ENST00000412589 747 ntBASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 AC233981.1-201ENST00000423224 461 ntBASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 RPL7L1P1-201ENST00000448259 785 ntBASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 AC010306.1-201ENST00000523223 1117 ntBASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 AP000859.1-201ENST00000525536 307 ntBASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 AC015917.1-201ENST00000579654 510 ntBASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 MIR4727-201ENST00000622232 55 ntBASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 MTCO1P8-201ENST00000416914 1523 ntBASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 AC139713.2-215ENST00000641428 5037 ntBASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SHANK3Q9BYB0 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 RPS12P18-201ENST00000442381 270 ntBASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 RPS24P13-201ENST00000442520 397 ntBASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 HMGB1P16-201ENST00000447155 540 ntBASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 EEF1B2P7-201ENST00000451177 676 ntBASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 RPL23AP67-201ENST00000465341 474 ntBASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 AL359715.5-201ENST00000623431 443 ntBASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 FAM133CP-201ENST00000332869 704 ntBASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 VN1R48P-201ENST00000448149 1036 ntBASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 Z99127.3-201ENST00000448158 395 ntBASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 RN7SKP244-201ENST00000516513 307 ntBASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 AP002404.1-201ENST00000532005 451 ntBASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 CYP2C60P-201ENST00000566088 139 ntBASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 AL008729.2-201ENST00000606393 473 ntBASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 AC016542.2-201ENST00000624201 619 ntBASIC4.07□□□□□ -1.76
SHANK3Q9BYB0 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
SHANK3Q9BYB0 TTC39DP-201ENST00000416781 1688 ntBASIC4.06□□□□□ -1.76
SHANK3Q9BYB0 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SHANK3Q9BYB0 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 164.1 ms