Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 AC009313.2-201ENST00000417893 1941 ntBASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
SHANK3Q9BYB0 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 NPM1P11-201ENST00000417106 855 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 OR6C64P-201ENST00000419708 825 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AC010095.1-201ENST00000443543 144 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 NPM1P13-201ENST00000452663 865 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 HMGB1P19-201ENST00000517578 577 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 IGHVIII-44-202ENST00000636235 289 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AC006504.1-201ENST00000562493 3666 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 SAGE4P-201ENST00000442271 3381 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AL121834.1-202ENST00000404494 277 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AC239809.1-201ENST00000450470 217 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AP002884.2-201ENST00000471647 395 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 OR4R3P-201ENST00000525084 838 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AC022080.3-201ENST00000544433 482 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AL121766.1-201ENST00000547436 487 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 MIR2682-201ENST00000580305 110 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AL139395.1-201ENST00000603662 160 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 HNRNPDLP4-201ENST00000605144 301 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 AP000542.2-201ENST00000623199 6179 ntBASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.32□□□□□ -1.72
SHANK3Q9BYB0 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 AL136360.1-201ENST00000503377 1900 ntBASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 SNORA7.4-201ENST00000384249 137 ntBASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 RNA5SP296-201ENST00000410523 111 ntBASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 OR2X1P-201ENST00000421144 687 ntBASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 AC087888.1-201ENST00000550884 1254 ntBASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 RPL23AP92-201ENST00000603609 255 ntBASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 AL137790.1-201ENST00000634283 177 ntBASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 AC068647.1-201ENST00000489539 2265 ntBASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SHANK3Q9BYB0 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 AC062016.1-201ENST00000355719 319 ntBASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 RNU4-44P-201ENST00000363050 141 ntBASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 RNU6ATAC3P-201ENST00000387974 126 ntBASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 RNU4-47P-201ENST00000410876 114 ntBASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 JKAMPP1-201ENST00000413804 919 ntBASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 AC002075.2-201ENST00000425207 252 ntBASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 Z93242.1-201ENST00000427102 353 ntBASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 AC099560.2-201ENST00000457554 255 ntBASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 HMGB3P14-201ENST00000494195 599 ntBASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 AP000926.4-201ENST00000527351 454 ntBASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 AC005242.1-201ENST00000585658 438 ntBASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.3□□□□□ -1.72
SHANK3Q9BYB0 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SHANK3Q9BYB0 OR6K4P-201ENST00000423179 955 ntBASIC4.29□□□□□ -1.72
SHANK3Q9BYB0 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC4.29□□□□□ -1.72
SHANK3Q9BYB0 SETP5-201ENST00000437270 562 ntBASIC4.29□□□□□ -1.72
SHANK3Q9BYB0 SLC31A1P1-201ENST00000451221 567 ntBASIC4.29□□□□□ -1.72
SHANK3Q9BYB0 RPS3AP43-201ENST00000479743 781 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 235.6 ms