Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AL354976.1-201ENST00000613843 387 ntBASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 AL353743.1-202ENST00000431724 1695 ntBASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 OOSP1P1-201ENST00000423265 274 ntBASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 SETD6P1-201ENST00000444575 317 ntBASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 MTND6P32-201ENST00000457611 483 ntBASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 TMED11P-201ENST00000479478 690 ntBASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 WDR61-205ENST00000558459 884 ntTSL 3 BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 AL390816.3-201ENST00000604527 1066 ntBASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 AL033523.1-201ENST00000605153 153 ntBASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 BNIP3P41-202ENST00000616656 861 ntBASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 GNG5P5-201ENST00000420444 220 ntBASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 OSTCP5-201ENST00000425293 453 ntBASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 AC005019.1-201ENST00000436455 431 ntBASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 ASNSP4-201ENST00000511103 447 ntBASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 LARP7P3-201ENST00000579888 337 ntBASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 AC125494.3-201ENST00000602759 455 ntBASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 AC006023.1-201ENST00000603944 259 ntBASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 UBE3AP2-201ENST00000429033 2259 ntBASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHANK3Q9BYB0 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 RPL23AP57-201ENST00000332361 466 ntBASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 TAF9BP1-201ENST00000396646 746 ntBASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 AC020893.1-201ENST00000502452 580 ntBASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 STMN1P2-201ENST00000508435 439 ntBASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 UBTFL9-201ENST00000534504 1148 ntBASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 AC139426.3-201ENST00000605648 2059 ntBASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 AC005183.1-201ENST00000603687 1979 ntBASIC4.81□□□□□ -1.64
SHANK3Q9BYB0 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 AC245054.1-201ENST00000420944 258 ntBASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 AC073063.1-201ENST00000434352 607 ntBASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 HLA-N-201ENST00000437516 135 ntBASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 AC093663.1-201ENST00000497190 394 ntBASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 AC021146.3-201ENST00000511911 260 ntBASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 AC069240.1-201ENST00000548774 375 ntBASIC4.8□□□□□ -1.64
SHANK3Q9BYB0 TRAV15-201ENST00000556680 249 ntBASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 146.1 ms