Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Trim3Q9R1R2 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Trim3Q9R1R2 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Trim3Q9R1R2 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Trim3Q9R1R2 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trim3Q9R1R2 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
Trim3Q9R1R2 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Trim3Q9R1R2 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Trim3Q9R1R2 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Trim3Q9R1R2 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC21.94■■□□□ 1.1
Trim3Q9R1R2 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
Trim3Q9R1R2 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
Trim3Q9R1R2 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trim3Q9R1R2 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Trim3Q9R1R2 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trim3Q9R1R2 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trim3Q9R1R2 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trim3Q9R1R2 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trim3Q9R1R2 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC21.91■■□□□ 1.1
Trim3Q9R1R2 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC21.91■■□□□ 1.1
Trim3Q9R1R2 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trim3Q9R1R2 AC153890.1-201ENSMUST00000220021 2469 ntBASIC21.9■■□□□ 1.1
Trim3Q9R1R2 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trim3Q9R1R2 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Trim3Q9R1R2 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC21.89■■□□□ 1.09
Trim3Q9R1R2 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC21.89■■□□□ 1.09
Trim3Q9R1R2 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trim3Q9R1R2 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
Trim3Q9R1R2 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trim3Q9R1R2 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trim3Q9R1R2 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
Trim3Q9R1R2 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC21.86■■□□□ 1.09
Trim3Q9R1R2 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Trim3Q9R1R2 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trim3Q9R1R2 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trim3Q9R1R2 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Trim3Q9R1R2 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Trim3Q9R1R2 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trim3Q9R1R2 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trim3Q9R1R2 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
Trim3Q9R1R2 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Trim3Q9R1R2 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Trim3Q9R1R2 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC21.83■■□□□ 1.08
Trim3Q9R1R2 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trim3Q9R1R2 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim3Q9R1R2 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Trim3Q9R1R2 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
Trim3Q9R1R2 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim3Q9R1R2 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC21.81■■□□□ 1.08
Trim3Q9R1R2 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Trim3Q9R1R2 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim3Q9R1R2 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC21.8■■□□□ 1.08
Trim3Q9R1R2 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Trim3Q9R1R2 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC21.79■■□□□ 1.08
Trim3Q9R1R2 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim3Q9R1R2 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim3Q9R1R2 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim3Q9R1R2 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim3Q9R1R2 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Trim3Q9R1R2 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Trim3Q9R1R2 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC21.77■■□□□ 1.08
Trim3Q9R1R2 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trim3Q9R1R2 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trim3Q9R1R2 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim3Q9R1R2 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trim3Q9R1R2 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim3Q9R1R2 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Trim3Q9R1R2 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trim3Q9R1R2 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Trim3Q9R1R2 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trim3Q9R1R2 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.75■■□□□ 1.07
Trim3Q9R1R2 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
Trim3Q9R1R2 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trim3Q9R1R2 Gm30023-201ENSMUST00000197970 889 ntBASIC21.75■■□□□ 1.07
Trim3Q9R1R2 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim3Q9R1R2 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
Trim3Q9R1R2 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trim3Q9R1R2 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim3Q9R1R2 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC21.74■■□□□ 1.07
Trim3Q9R1R2 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC21.74■■□□□ 1.07
Trim3Q9R1R2 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim3Q9R1R2 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.74■■□□□ 1.07
Trim3Q9R1R2 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim3Q9R1R2 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC21.73■■□□□ 1.07
Trim3Q9R1R2 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC21.73■■□□□ 1.07
Trim3Q9R1R2 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trim3Q9R1R2 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trim3Q9R1R2 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Trim3Q9R1R2 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC21.72■■□□□ 1.07
Trim3Q9R1R2 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
Trim3Q9R1R2 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim3Q9R1R2 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim3Q9R1R2 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Trim3Q9R1R2 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC21.71■■□□□ 1.07
Trim3Q9R1R2 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
Trim3Q9R1R2 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Trim3Q9R1R2 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC21.7■■□□□ 1.06
Trim3Q9R1R2 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC21.7■■□□□ 1.06
Trim3Q9R1R2 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Trim3Q9R1R2 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 15.1 ms