Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cdc40Q9DC48 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cdc40Q9DC48 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC21.7■■□□□ 1.06
Cdc40Q9DC48 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Cdc40Q9DC48 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Cdc40Q9DC48 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cdc40Q9DC48 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cdc40Q9DC48 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Cdc40Q9DC48 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Cdc40Q9DC48 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC21.68■■□□□ 1.06
Cdc40Q9DC48 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cdc40Q9DC48 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cdc40Q9DC48 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cdc40Q9DC48 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Cdc40Q9DC48 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC21.67■■□□□ 1.06
Cdc40Q9DC48 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cdc40Q9DC48 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cdc40Q9DC48 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Cdc40Q9DC48 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cdc40Q9DC48 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cdc40Q9DC48 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cdc40Q9DC48 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Cdc40Q9DC48 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC21.63■■□□□ 1.05
Cdc40Q9DC48 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Cdc40Q9DC48 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC21.63■■□□□ 1.05
Cdc40Q9DC48 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Cdc40Q9DC48 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Cdc40Q9DC48 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cdc40Q9DC48 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC21.62■■□□□ 1.05
Cdc40Q9DC48 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cdc40Q9DC48 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cdc40Q9DC48 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cdc40Q9DC48 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cdc40Q9DC48 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cdc40Q9DC48 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
Cdc40Q9DC48 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Cdc40Q9DC48 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cdc40Q9DC48 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cdc40Q9DC48 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
Cdc40Q9DC48 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Cdc40Q9DC48 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
Cdc40Q9DC48 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Cdc40Q9DC48 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Cdc40Q9DC48 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC21.56■■□□□ 1.04
Cdc40Q9DC48 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC21.56■■□□□ 1.04
Cdc40Q9DC48 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
Cdc40Q9DC48 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cdc40Q9DC48 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cdc40Q9DC48 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cdc40Q9DC48 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC21.55■■□□□ 1.04
Cdc40Q9DC48 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cdc40Q9DC48 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Cdc40Q9DC48 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cdc40Q9DC48 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cdc40Q9DC48 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC21.53■■□□□ 1.04
Cdc40Q9DC48 Gm30023-201ENSMUST00000197970 889 ntBASIC21.53■■□□□ 1.04
Cdc40Q9DC48 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC21.53■■□□□ 1.04
Cdc40Q9DC48 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Cdc40Q9DC48 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cdc40Q9DC48 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cdc40Q9DC48 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cdc40Q9DC48 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
Cdc40Q9DC48 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Cdc40Q9DC48 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cdc40Q9DC48 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.51■■□□□ 1.03
Cdc40Q9DC48 AC131739.1-201ENSMUST00000221692 1245 ntBASIC21.51■■□□□ 1.03
Cdc40Q9DC48 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC21.51■■□□□ 1.03
Cdc40Q9DC48 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
Cdc40Q9DC48 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
Cdc40Q9DC48 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Cdc40Q9DC48 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Cdc40Q9DC48 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Cdc40Q9DC48 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cdc40Q9DC48 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Cdc40Q9DC48 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC21.49■■□□□ 1.03
Cdc40Q9DC48 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Cdc40Q9DC48 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cdc40Q9DC48 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Cdc40Q9DC48 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
Cdc40Q9DC48 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Cdc40Q9DC48 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cdc40Q9DC48 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Cdc40Q9DC48 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cdc40Q9DC48 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cdc40Q9DC48 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
Cdc40Q9DC48 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Cdc40Q9DC48 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cdc40Q9DC48 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC21.45■■□□□ 1.02
Cdc40Q9DC48 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Cdc40Q9DC48 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Cdc40Q9DC48 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cdc40Q9DC48 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Cdc40Q9DC48 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Cdc40Q9DC48 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Cdc40Q9DC48 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Cdc40Q9DC48 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cdc40Q9DC48 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cdc40Q9DC48 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC21.43■■□□□ 1.02
Cdc40Q9DC48 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Cdc40Q9DC48 Particl-201ENSMUST00000205370 1560 ntBASIC21.42■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 119.2 ms