Protein–RNA interactions for Protein: Q91Y21

Pcdha1, Protocadherin alpha 1, mousemouse

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha1Q91Y21 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC24.71■■□□□ 1.55
Pcdha1Q91Y21 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC24.71■■□□□ 1.55
Pcdha1Q91Y21 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
Pcdha1Q91Y21 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
Pcdha1Q91Y21 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC24.69■■□□□ 1.54
Pcdha1Q91Y21 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
Pcdha1Q91Y21 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Pcdha1Q91Y21 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
Pcdha1Q91Y21 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Pcdha1Q91Y21 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC24.68■■□□□ 1.54
Pcdha1Q91Y21 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC24.68■■□□□ 1.54
Pcdha1Q91Y21 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC24.68■■□□□ 1.54
Pcdha1Q91Y21 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Pcdha1Q91Y21 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Pcdha1Q91Y21 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC24.66■■□□□ 1.54
Pcdha1Q91Y21 Particl-201ENSMUST00000205370 1560 ntBASIC24.66■■□□□ 1.54
Pcdha1Q91Y21 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Pcdha1Q91Y21 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Pcdha1Q91Y21 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.54
Pcdha1Q91Y21 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Pcdha1Q91Y21 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
Pcdha1Q91Y21 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC24.63■■□□□ 1.53
Pcdha1Q91Y21 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Pcdha1Q91Y21 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Pcdha1Q91Y21 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
Pcdha1Q91Y21 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC24.62■■□□□ 1.53
Pcdha1Q91Y21 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
Pcdha1Q91Y21 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Pcdha1Q91Y21 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Pcdha1Q91Y21 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
Pcdha1Q91Y21 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC24.59■■□□□ 1.53
Pcdha1Q91Y21 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
Pcdha1Q91Y21 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Pcdha1Q91Y21 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Pcdha1Q91Y21 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Pcdha1Q91Y21 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
Pcdha1Q91Y21 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Pcdha1Q91Y21 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
Pcdha1Q91Y21 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Pcdha1Q91Y21 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Pcdha1Q91Y21 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
Pcdha1Q91Y21 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
Pcdha1Q91Y21 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Pcdha1Q91Y21 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
Pcdha1Q91Y21 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Pcdha1Q91Y21 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Pcdha1Q91Y21 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Pcdha1Q91Y21 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Pcdha1Q91Y21 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Pcdha1Q91Y21 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
Pcdha1Q91Y21 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Pcdha1Q91Y21 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
Pcdha1Q91Y21 AC167019.3-201ENSMUST00000228225 1266 ntBASIC24.51■■□□□ 1.51
Pcdha1Q91Y21 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Pcdha1Q91Y21 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
Pcdha1Q91Y21 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Pcdha1Q91Y21 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Pcdha1Q91Y21 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
Pcdha1Q91Y21 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC24.48■■□□□ 1.51
Pcdha1Q91Y21 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Pcdha1Q91Y21 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC24.47■■□□□ 1.51
Pcdha1Q91Y21 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC24.47■■□□□ 1.51
Pcdha1Q91Y21 Gm11175-201ENSMUST00000116172 543 ntBASIC24.47■■□□□ 1.51
Pcdha1Q91Y21 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Pcdha1Q91Y21 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Pcdha1Q91Y21 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC24.45■■□□□ 1.5
Pcdha1Q91Y21 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Pcdha1Q91Y21 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC24.45■■□□□ 1.5
Pcdha1Q91Y21 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Pcdha1Q91Y21 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Pcdha1Q91Y21 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC24.43■■□□□ 1.5
Pcdha1Q91Y21 Gm6311-201ENSMUST00000073790 878 ntBASIC24.43■■□□□ 1.5
Pcdha1Q91Y21 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
Pcdha1Q91Y21 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC24.42■■□□□ 1.5
Pcdha1Q91Y21 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
Pcdha1Q91Y21 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC24.42■■□□□ 1.5
Pcdha1Q91Y21 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Pcdha1Q91Y21 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
Pcdha1Q91Y21 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Pcdha1Q91Y21 Mir6538-201ENSMUST00000183713 110 ntBASIC24.39■■□□□ 1.49
Pcdha1Q91Y21 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC24.38■■□□□ 1.49
Pcdha1Q91Y21 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Pcdha1Q91Y21 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Pcdha1Q91Y21 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
Pcdha1Q91Y21 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC24.37■■□□□ 1.49
Pcdha1Q91Y21 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
Pcdha1Q91Y21 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
Pcdha1Q91Y21 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
Pcdha1Q91Y21 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Pcdha1Q91Y21 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Pcdha1Q91Y21 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC24.35■■□□□ 1.49
Pcdha1Q91Y21 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Pcdha1Q91Y21 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Pcdha1Q91Y21 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Pcdha1Q91Y21 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Pcdha1Q91Y21 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
Pcdha1Q91Y21 Gm37136-201ENSMUST00000194368 194 ntBASIC24.34■■□□□ 1.49
Pcdha1Q91Y21 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
Pcdha1Q91Y21 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC24.34■■□□□ 1.49
Pcdha1Q91Y21 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC24.33■■□□□ 1.49
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms