Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC26.45■■□□□ 1.82
Ushbp1Q8R370 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Ushbp1Q8R370 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
Ushbp1Q8R370 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
Ushbp1Q8R370 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
Ushbp1Q8R370 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Ushbp1Q8R370 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Ushbp1Q8R370 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Ushbp1Q8R370 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC26.43■■□□□ 1.82
Ushbp1Q8R370 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Ushbp1Q8R370 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
Ushbp1Q8R370 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Ushbp1Q8R370 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
Ushbp1Q8R370 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC26.4■■□□□ 1.82
Ushbp1Q8R370 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC26.4■■□□□ 1.82
Ushbp1Q8R370 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC26.39■■□□□ 1.82
Ushbp1Q8R370 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ushbp1Q8R370 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Ushbp1Q8R370 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC26.38■■□□□ 1.81
Ushbp1Q8R370 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ushbp1Q8R370 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ushbp1Q8R370 Gm11599-201ENSMUST00000118720 878 ntBASIC26.37■■□□□ 1.81
Ushbp1Q8R370 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Ushbp1Q8R370 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Ushbp1Q8R370 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Ushbp1Q8R370 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
Ushbp1Q8R370 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Ushbp1Q8R370 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Ushbp1Q8R370 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
Ushbp1Q8R370 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Ushbp1Q8R370 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC26.35■■□□□ 1.81
Ushbp1Q8R370 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC26.34■■□□□ 1.81
Ushbp1Q8R370 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ushbp1Q8R370 Gm30023-201ENSMUST00000197970 889 ntBASIC26.34■■□□□ 1.81
Ushbp1Q8R370 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
Ushbp1Q8R370 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ushbp1Q8R370 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ushbp1Q8R370 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ushbp1Q8R370 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Ushbp1Q8R370 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC26.33■■□□□ 1.81
Ushbp1Q8R370 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC26.33■■□□□ 1.81
Ushbp1Q8R370 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
Ushbp1Q8R370 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
Ushbp1Q8R370 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Ushbp1Q8R370 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Ushbp1Q8R370 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
Ushbp1Q8R370 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC26.3■■□□□ 1.8
Ushbp1Q8R370 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Ushbp1Q8R370 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Ushbp1Q8R370 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ushbp1Q8R370 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
Ushbp1Q8R370 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
Ushbp1Q8R370 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
Ushbp1Q8R370 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ushbp1Q8R370 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
Ushbp1Q8R370 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC26.28■■□□□ 1.8
Ushbp1Q8R370 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ushbp1Q8R370 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
Ushbp1Q8R370 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC26.27■■□□□ 1.8
Ushbp1Q8R370 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ushbp1Q8R370 AC153890.1-201ENSMUST00000220021 2469 ntBASIC26.27■■□□□ 1.8
Ushbp1Q8R370 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ushbp1Q8R370 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Ushbp1Q8R370 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Ushbp1Q8R370 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Ushbp1Q8R370 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Ushbp1Q8R370 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ushbp1Q8R370 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC26.24■■□□□ 1.79
Ushbp1Q8R370 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC26.24■■□□□ 1.79
Ushbp1Q8R370 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC26.23■■□□□ 1.79
Ushbp1Q8R370 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ushbp1Q8R370 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC26.23■■□□□ 1.79
Ushbp1Q8R370 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Ushbp1Q8R370 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ushbp1Q8R370 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Ushbp1Q8R370 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
Ushbp1Q8R370 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Ushbp1Q8R370 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC26.21■■□□□ 1.79
Ushbp1Q8R370 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.79
Ushbp1Q8R370 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
Ushbp1Q8R370 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Ushbp1Q8R370 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Ushbp1Q8R370 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Ushbp1Q8R370 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
Ushbp1Q8R370 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
Ushbp1Q8R370 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Ushbp1Q8R370 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC26.18■■□□□ 1.78
Ushbp1Q8R370 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC26.17■■□□□ 1.78
Ushbp1Q8R370 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Ushbp1Q8R370 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Ushbp1Q8R370 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Ushbp1Q8R370 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC26.16■■□□□ 1.78
Ushbp1Q8R370 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Ushbp1Q8R370 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Ushbp1Q8R370 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Ushbp1Q8R370 AC122428.3-201ENSMUST00000215551 2290 ntBASIC26.14■■□□□ 1.78
Ushbp1Q8R370 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC26.14■■□□□ 1.78
Ushbp1Q8R370 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.78
Ushbp1Q8R370 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
Ushbp1Q8R370 Gm11175-201ENSMUST00000116172 543 ntBASIC26.14■■□□□ 1.78
Retrieved 100 of 76,532 protein–RNA pairs in 388.8 ms